RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 RHOHQ15669 191 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 DAND5Q8N907 189 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 CLEC2BQ92478 149 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 FBN2P35556 2912 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 A0A0J9YX75 114 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 A6NDX4 124 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 I3L3M4 83 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 RBMY1A1P0DJD3 496 aaKnown RBP13.55□□□□□ -0.24
CCDC3-201ENST00000378825 RBMY1CP0DJD4 496 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 RBMY1FQ15415 496 aaKnown RBP13.55□□□□□ -0.24
CCDC3-201ENST00000378825 ODF3Q96PU9 254 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 IGHV1OR15-1A0A075B7D0 117 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 CD28P10747 220 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 ZNF462Q96JM2 2506 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 ATXN8Q156A1 80 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 TIMM21Q9BVV7 248 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 MAPK1IP1LQ8NDC0 245 aa13.54□□□□□ -0.24
CCDC3-201ENST00000378825 ANKRD17O75179 2603 aaKnown RBP13.54□□□□□ -0.24
CCDC3-201ENST00000378825 C2CD3Q4AC94 2353 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 NOTCH3Q9UM47 2321 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 ABCA12Q86UK0 2595 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 SNCGO76070 127 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 GAGE2BQ13066 116 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 GAGE2EQ4V326 116 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 GAGE2DQ9UEU5 116 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 CCDC179H3BU77 68 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 MXRA5Q9NR99 2828 aa13.52□□□□□ -0.24
CCDC3-201ENST00000378825 MSMBP08118 114 aa13.52□□□□□ -0.24
CCDC3-201ENST00000378825 PTPN13Q12923 2485 aa13.52□□□□□ -0.25
CCDC3-201ENST00000378825 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.51□□□□□ -0.25
CCDC3-201ENST00000378825 H7C423 109 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 NDUFV3P56181 108 aaKnown RBP13.51□□□□□ -0.25
CCDC3-201ENST00000378825 Q6ZSN1 163 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 NDUFA12Q9UI09 145 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 BRI3O95415 125 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 CFHR3Q02985 330 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 TTC32Q5I0X7 151 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 ICOSQ9Y6W8 199 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 TRBV10-2A0A0K0K1G8 114 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 H3BUA1 57 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 C15orf53Q8NAA6 179 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-201ENST00000378825 TRBV30A0A0K0K1B3 111 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 IGKV2-29A2NJV5 120 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-201ENST00000378825 SYNJ2BPP57105 145 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 GAGE5Q13069 117 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 GAGE6Q13070 117 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 C2orf82Q6UX34 121 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 SVIPQ8NHG7 77 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 TRAV8-4A0A0B4J246 113 aa13.49□□□□□ -0.25
CCDC3-201ENST00000378825 IGHV3-38A0A0C4DH36 116 aa13.49□□□□□ -0.25
CCDC3-201ENST00000378825 DUX3Q96PT4 197 aa13.49□□□□□ -0.25
CCDC3-201ENST00000378825 H3BMM0 161 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 K7EQG2 157 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 UBE2WQ96B02 151 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 K7EMT4 169 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 MRPS36P82909 103 aaKnown RBP13.48□□□□□ -0.25
CCDC3-201ENST00000378825 M0QXV9 152 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 SNRPD3P62318 126 aaKnown RBP13.48□□□□□ -0.25
CCDC3-201ENST00000378825 IGHV1-58A0A0C4DH39 117 aa13.47□□□□□ -0.25
CCDC3-201ENST00000378825 A0A0U1RRA0 63 aa13.47□□□□□ -0.25
CCDC3-201ENST00000378825 PRB1P04280 392 aa13.47□□□□□ -0.25
CCDC3-201ENST00000378825 USP24Q9UPU5 2620 aa13.46□□□□□ -0.25
CCDC3-201ENST00000378825 IGHV4-59P01825 116 aa13.46□□□□□ -0.25
CCDC3-201ENST00000378825 PSMB8P28062 276 aa13.46□□□□□ -0.25
CCDC3-201ENST00000378825 TLN2Q9Y4G6 2542 aa13.46□□□□□ -0.26
CCDC3-201ENST00000378825 RPL13AP40429 203 aaKnown RBP13.46□□□□□ -0.26
CCDC3-201ENST00000378825 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.45□□□□□ -0.26
CCDC3-201ENST00000378825 VSIG2Q96IQ7 327 aa13.45□□□□□ -0.26
CCDC3-201ENST00000378825 AKAP9Q99996 3911 aa13.45□□□□□ -0.26
CCDC3-201ENST00000378825 MYO9AB2RTY4 2548 aa13.45□□□□□ -0.26
CCDC3-201ENST00000378825 MIAQ16674 131 aa13.44□□□□□ -0.26
CCDC3-201ENST00000378825 ZNF625Q96I27 306 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-201ENST00000378825 IFITM1P13164 125 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 DEFB112Q30KQ8 113 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 HIST2H2BDQ6DRA6 164 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 LINC00467Q9BRT7 94 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 CHCHD7Q9BUK0 85 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 NAV2Q8IVL1 2488 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 B4DSR2 109 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 CDKN2A-AS1Q9UH64 79 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 TEX15Q9BXT5 2789 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 TMEM61Q8N0U2 210 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 TNFRSF18Q9Y5U5 241 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 UBE2D4Q9Y2X8 147 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 PYGO1Q9Y3Y4 419 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 SPANXDQ9BXN6 97 aa13.41□□□□□ -0.26
CCDC3-201ENST00000378825 SPANXCQ9NY87 97 aa13.41□□□□□ -0.26
CCDC3-201ENST00000378825 C3orf56Q8N813 242 aa13.41□□□□□ -0.26
CCDC3-201ENST00000378825 RBMY1BA6NDE4 496 aaKnown RBP13.4□□□□□ -0.26
CCDC3-201ENST00000378825 RBMY1EA6NEQ0 496 aaKnown RBP13.4□□□□□ -0.26
CCDC3-201ENST00000378825 RBMY1DP0C7P1 496 aaKnown RBP13.4□□□□□ -0.26
CCDC3-201ENST00000378825 GAGE12JA6NER3 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE7O76087 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE12FP0CL80 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE12GP0CL81 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE12IP0CL82 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE4Q13068 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 DEFB136Q30KP8 78 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 NDUFA7O95182 113 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 183.6 ms