RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 WFDC9Q8NEX5 89 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 NCR3O14931 201 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 Q8N976 141 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 NAV3Q8IVL0 2385 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 IGF1P05019 195 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 CDKN2A-AS1Q9UH64 79 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 ETDCA0A1B0GVM5 59 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 UBE2BP63146 152 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 BRK1Q8WUW1 75 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 SPATA25Q9BR10 227 aa14.78□□□□□ -0.04
CCDC88B-202ENST00000356786 CFAP126Q5VTH2 177 aa14.77□□□□□ -0.04
CCDC88B-202ENST00000356786 XGP55808 180 aa14.77□□□□□ -0.04
CCDC88B-202ENST00000356786 IGLV2-11P01706 119 aa14.77□□□□□ -0.05
CCDC88B-202ENST00000356786 MRPS12O15235 138 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-202ENST00000356786 ESM1Q9NQ30 184 aa14.76□□□□□ -0.05
CCDC88B-202ENST00000356786 MP68P56378 58 aa14.75□□□□□ -0.05
CCDC88B-202ENST00000356786 C3orf22Q8N5N4 141 aa14.75□□□□□ -0.05
CCDC88B-202ENST00000356786 CLUHP3Q96NS8 147 aa14.75□□□□□ -0.05
CCDC88B-202ENST00000356786 TRBV30A0A0K0K1B3 111 aa14.75□□□□□ -0.05
CCDC88B-202ENST00000356786 TMEM223A0PJW6 202 aa14.75□□□□□ -0.05
CCDC88B-202ENST00000356786 IGHV4-30-2A0A087WSY4 118 aa14.74□□□□□ -0.05
CCDC88B-202ENST00000356786 CCDC168Q8NDH2 2452 aa14.74□□□□□ -0.05
CCDC88B-202ENST00000356786 CEP350Q5VT06 3117 aa14.74□□□□□ -0.05
CCDC88B-202ENST00000356786 LINC01548A6NM66 108 aa14.74□□□□□ -0.05
CCDC88B-202ENST00000356786 NDUFS5O43920 106 aa14.74□□□□□ -0.05
CCDC88B-202ENST00000356786 IGLV4-3A0A075B6K6 122 aa14.74□□□□□ -0.05
CCDC88B-202ENST00000356786 KIAA1549Q9HCM3 1950 aa14.73□□□□□ -0.05
CCDC88B-202ENST00000356786 UPK3BQ9BT76 320 aa14.73□□□□□ -0.05
CCDC88B-202ENST00000356786 H3BQ85 93 aa14.73□□□□□ -0.05
CCDC88B-202ENST00000356786 HIGD2BQ4VC39 106 aa14.72□□□□□ -0.05
CCDC88B-202ENST00000356786 SIRPDQ9H106 197 aa14.72□□□□□ -0.05
CCDC88B-202ENST00000356786 RMI2Q96E14 147 aa14.72□□□□□ -0.05
CCDC88B-202ENST00000356786 HCFC1P51610 2035 aa14.72□□□□□ -0.05
CCDC88B-202ENST00000356786 ABCA2Q9BZC7 2435 aa14.72□□□□□ -0.05
CCDC88B-202ENST00000356786 HHLA3Q9XRX5 114 aa14.71□□□□□ -0.05
CCDC88B-202ENST00000356786 HIVEP2P31629 2446 aa14.71□□□□□ -0.05
CCDC88B-202ENST00000356786 TRBV10-1A0A0K0K1A3 114 aa14.71□□□□□ -0.05
CCDC88B-202ENST00000356786 DIRC1Q969H9 104 aa14.71□□□□□ -0.05
CCDC88B-202ENST00000356786 PIEZO2Q9H5I5 2752 aa14.71□□□□□ -0.05
CCDC88B-202ENST00000356786 ARHGAP32A7KAX9 2087 aa14.71□□□□□ -0.05
CCDC88B-202ENST00000356786 SPAG11BQ08648 103 aa14.71□□□□□ -0.06
CCDC88B-202ENST00000356786 CXCL5P42830 114 aa14.7□□□□□ -0.06
CCDC88B-202ENST00000356786 LINC00308Q8TCZ7 52 aa14.7□□□□□ -0.06
CCDC88B-202ENST00000356786 IGHV3-30P01768 117 aa14.7□□□□□ -0.06
CCDC88B-202ENST00000356786 IGHV3-30-5P0DP03 117 aa14.7□□□□□ -0.06
CCDC88B-202ENST00000356786 PDE6GP18545 87 aa14.7□□□□□ -0.06
CCDC88B-202ENST00000356786 CCDC179H3BU77 68 aa14.7□□□□□ -0.06
CCDC88B-202ENST00000356786 RPL18AQ02543 176 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-202ENST00000356786 UFSP1Q6NVU6 142 aa14.69□□□□□ -0.06
CCDC88B-202ENST00000356786 ZFAND2AQ8N6M9 145 aa14.69□□□□□ -0.06
CCDC88B-202ENST00000356786 URB1-AS1Q96HZ7 61 aa14.69□□□□□ -0.06
CCDC88B-202ENST00000356786 LINC00467Q9BRT7 94 aa14.69□□□□□ -0.06
CCDC88B-202ENST00000356786 NDUFA1O15239 70 aa14.68□□□□□ -0.06
CCDC88B-202ENST00000356786 GAS8-AS1O95177 125 aa14.68□□□□□ -0.06
CCDC88B-202ENST00000356786 SMAD5-AS1Q9Y6J3 95 aa14.68□□□□□ -0.06
CCDC88B-202ENST00000356786 NRACQ8N912 160 aa14.68□□□□□ -0.06
CCDC88B-202ENST00000356786 PIK3CD-AS1Q5SR53 167 aa14.67□□□□□ -0.06
CCDC88B-202ENST00000356786 C20orf173Q96LM9 149 aa14.67□□□□□ -0.06
CCDC88B-202ENST00000356786 HIVEP3Q5T1R4 2406 aa14.67□□□□□ -0.06
CCDC88B-202ENST00000356786 CEP192Q8TEP8 1941 aa14.67□□□□□ -0.06
CCDC88B-202ENST00000356786 FAM236DA0A1B0GTK5 79 aa14.67□□□□□ -0.06
CCDC88B-202ENST00000356786 FAM236CP0DP71 79 aa14.67□□□□□ -0.06
CCDC88B-202ENST00000356786 SLPIP03973 132 aa14.66□□□□□ -0.06
CCDC88B-202ENST00000356786 NAV2Q8IVL1 2488 aa14.66□□□□□ -0.06
CCDC88B-202ENST00000356786 NDUFA7O95182 113 aa14.66□□□□□ -0.06
CCDC88B-202ENST00000356786 C10orf105Q8TEF2 133 aa14.66□□□□□ -0.06
CCDC88B-202ENST00000356786 M0QY20 66 aa14.66□□□□□ -0.06
CCDC88B-202ENST00000356786 PIEZO1Q92508 2521 aa14.65□□□□□ -0.06
CCDC88B-202ENST00000356786 ODF3BA8MYP8 253 aa14.65□□□□□ -0.06
CCDC88B-202ENST00000356786 DAZAP2Q15038 168 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-202ENST00000356786 C22orf34Q6ZV56 151 aa14.65□□□□□ -0.06
CCDC88B-202ENST00000356786 ZFAND3Q9H8U3 227 aa14.65□□□□□ -0.06
CCDC88B-202ENST00000356786 ENHOQ6UWT2 76 aa14.64□□□□□ -0.07
CCDC88B-202ENST00000356786 Q6ZS46 218 aa14.64□□□□□ -0.07
CCDC88B-202ENST00000356786 TRBV27A0A0K0K1C4 114 aa14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 KLK12Q9UKR0 248 aa14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 SPART-AS1P0CW21 52 aa14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 IMUPQ9GZP8 106 aa14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 A8MZ25 164 aa14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 TMEM263Q8WUH6 116 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 FAM110AQ9BQ89 295 aa14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 C11orf21Q9P2W6 132 aa14.63□□□□□ -0.07
CCDC88B-202ENST00000356786 ADORA2A-AS1P86434 159 aa14.62□□□□□ -0.07
CCDC88B-202ENST00000356786 MPLKIPQ8TAP9 179 aa14.62□□□□□ -0.07
CCDC88B-202ENST00000356786 Q6ZTI0 123 aa14.62□□□□□ -0.07
CCDC88B-202ENST00000356786 TMEM89A2RUT3 159 aa14.61□□□□□ -0.07
CCDC88B-202ENST00000356786 NCOR2Q9Y618 2525 aa14.61□□□□□ -0.07
CCDC88B-202ENST00000356786 BPY2O14599 106 aa14.61□□□□□ -0.07
CCDC88B-202ENST00000356786 ODF3Q96PU9 254 aa14.61□□□□□ -0.07
CCDC88B-202ENST00000356786 LST1O00453 97 aa14.6□□□□□ -0.07
CCDC88B-202ENST00000356786 A6NDX4 124 aa14.6□□□□□ -0.07
CCDC88B-202ENST00000356786 K7EQG2 157 aa14.6□□□□□ -0.07
CCDC88B-202ENST00000356786 COX7BP24311 80 aa14.6□□□□□ -0.07
CCDC88B-202ENST00000356786 ATP5EP2Q5VTU8 51 aa14.6□□□□□ -0.07
CCDC88B-202ENST00000356786 IGF2RP11717 2491 aa14.6□□□□□ -0.07
CCDC88B-202ENST00000356786 NDUFB1O75438 58 aa14.6□□□□□ -0.07
CCDC88B-202ENST00000356786 SERP2Q8N6R1 65 aa14.59□□□□□ -0.07
CCDC88B-202ENST00000356786 CLPSL1A2RUU4 121 aa14.59□□□□□ -0.07
CCDC88B-202ENST00000356786 USP17L23D6RBM5 183 aa14.59□□□□□ -0.07
CCDC88B-202ENST00000356786 MAP6D1Q9H9H5 199 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms