RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 CARD19Q96LW7 228 aa13.23□□□□□ -0.29
PTP4A3-202ENST00000349124 C1QTNF4Q9BXJ3 329 aa13.23□□□□□ -0.29
PTP4A3-202ENST00000349124 NIPBLQ6KC79 2804 aaeCLIP13.23□□□□□ -0.29
PTP4A3-202ENST00000349124 VPREB3Q9UKI3 123 aa13.22□□□□□ -0.29
PTP4A3-202ENST00000349124 TRGV11A0A075B6L2 103 aa13.21□□□□□ -0.29
PTP4A3-202ENST00000349124 IGHV3-38A0A0C4DH36 116 aa13.21□□□□□ -0.29
PTP4A3-202ENST00000349124 CD28P10747 220 aa13.21□□□□□ -0.29
PTP4A3-202ENST00000349124 UBE2E2Q96LR5 201 aa13.21□□□□□ -0.29
PTP4A3-202ENST00000349124 PRB1P04280 392 aa13.2□□□□□ -0.3
PTP4A3-202ENST00000349124 ELANEP08246 267 aa13.2□□□□□ -0.3
PTP4A3-202ENST00000349124 CFAP161Q6P656 301 aa13.2□□□□□ -0.3
PTP4A3-202ENST00000349124 PRRC2AP48634 2157 aaKnown RBP13.2□□□□□ -0.3
PTP4A3-202ENST00000349124 H3BMM0 161 aa13.2□□□□□ -0.3
PTP4A3-202ENST00000349124 CIDEAO60543 219 aa13.2□□□□□ -0.3
PTP4A3-202ENST00000349124 TMEM89A2RUT3 159 aa13.19□□□□□ -0.3
PTP4A3-202ENST00000349124 IGHV3-30-3P0DP02 117 aa13.19□□□□□ -0.3
PTP4A3-202ENST00000349124 TMEM61Q8N0U2 210 aa13.19□□□□□ -0.3
PTP4A3-202ENST00000349124 CDIP1Q9H305 208 aa13.19□□□□□ -0.3
PTP4A3-202ENST00000349124 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.19□□□□□ -0.3
PTP4A3-202ENST00000349124 IGKV2-29A2NJV5 120 aaPredicted RBP13.19□□□□□ -0.3
PTP4A3-202ENST00000349124 Q6YL49 198 aa13.19□□□□□ -0.3
PTP4A3-202ENST00000349124 AKAP9Q99996 3911 aa13.18□□□□□ -0.3
PTP4A3-202ENST00000349124 A0A0J9YXY3 114 aa13.18□□□□□ -0.3
PTP4A3-202ENST00000349124 IGHV3-33P01772 117 aa13.18□□□□□ -0.3
PTP4A3-202ENST00000349124 KRTAP10-9P60411 292 aa13.18□□□□□ -0.3
PTP4A3-202ENST00000349124 TMEM263Q8WUH6 116 aaKnown RBP13.18□□□□□ -0.3
PTP4A3-202ENST00000349124 TNFRSF18Q9Y5U5 241 aa13.18□□□□□ -0.3
PTP4A3-202ENST00000349124 PRSS2P07478 247 aa13.17□□□□□ -0.3
PTP4A3-202ENST00000349124 DSCR9P59020 149 aa13.17□□□□□ -0.3
PTP4A3-202ENST00000349124 KHDC1LQ5JSQ8 128 aa13.17□□□□□ -0.3
PTP4A3-202ENST00000349124 ADAMTSL4-AS1Q5T5F5 129 aa13.17□□□□□ -0.3
PTP4A3-202ENST00000349124 NPC2P61916 151 aa13.17□□□□□ -0.3
PTP4A3-202ENST00000349124 Q6ZSV7 163 aa13.16□□□□□ -0.3
PTP4A3-202ENST00000349124 CCDC168Q8NDH2 2452 aa13.15□□□□□ -0.3
PTP4A3-202ENST00000349124 M0R2P5 195 aa13.15□□□□□ -0.3
PTP4A3-202ENST00000349124 ANKRD29Q8N6D5 301 aa13.15□□□□□ -0.3
PTP4A3-202ENST00000349124 CHCHD7Q9BUK0 85 aa13.15□□□□□ -0.3
PTP4A3-202ENST00000349124 TIMM21Q9BVV7 248 aa13.15□□□□□ -0.3
PTP4A3-202ENST00000349124 ERG28Q9UKR5 140 aa13.15□□□□□ -0.3
PTP4A3-202ENST00000349124 SPINK8P0C7L1 97 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 TEN1Q86WV5 123 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 RNF152Q8N8N0 203 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 LINC01587Q99440 93 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 TRBV20-1A0A075B6N2 111 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 A8MWV9 139 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 C9JAW5 83 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 MT-ATP8P03928 68 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 IGHV4-31P0DP07 118 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 LITAFQ99732 161 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 JMJD1CQ15652 2540 aa13.14□□□□□ -0.31
PTP4A3-202ENST00000349124 MRPS36P82909 103 aaKnown RBP13.13□□□□□ -0.31
PTP4A3-202ENST00000349124 ATP6V0E2Q8NHE4 81 aa13.13□□□□□ -0.31
PTP4A3-202ENST00000349124 LINC00467Q9BRT7 94 aa13.13□□□□□ -0.31
PTP4A3-202ENST00000349124 Q1RN00 199 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 LYRM7Q5U5X0 104 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 Q6ZUT4 128 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 PYGO1Q9Y3Y4 419 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 J3QLI3 93 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 SBSPONQ8IVN8 264 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 C11orf44Q8N8P7 122 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 PPDPFLQ8WWR9 84 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 XGP55808 180 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 UBE2D4Q9Y2X8 147 aa13.12□□□□□ -0.31
PTP4A3-202ENST00000349124 FSHBP01225 129 aa13.11□□□□□ -0.31
PTP4A3-202ENST00000349124 MAP6D1Q9H9H5 199 aa13.11□□□□□ -0.31
PTP4A3-202ENST00000349124 IGHV3OR16-12A0A075B7B8 117 aa13.11□□□□□ -0.31
PTP4A3-202ENST00000349124 SLC25A20O43772 301 aa13.11□□□□□ -0.31
PTP4A3-202ENST00000349124 DAND5Q8N907 189 aa13.11□□□□□ -0.31
PTP4A3-202ENST00000349124 XCL2Q9UBD3 114 aa13.11□□□□□ -0.31
PTP4A3-202ENST00000349124 NDUFA12Q9UI09 145 aa13.11□□□□□ -0.31
PTP4A3-202ENST00000349124 SCGB1A1P11684 91 aa13.1□□□□□ -0.31
PTP4A3-202ENST00000349124 C11orf72Q8NBR9 251 aa13.1□□□□□ -0.31
PTP4A3-202ENST00000349124 USP24Q9UPU5 2620 aa13.1□□□□□ -0.31
PTP4A3-202ENST00000349124 IGHV1-58A0A0C4DH39 117 aa13.1□□□□□ -0.31
PTP4A3-202ENST00000349124 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.1□□□□□ -0.31
PTP4A3-202ENST00000349124 NBPF19A0A087WUL8 3843 aa13.09□□□□□ -0.31
PTP4A3-202ENST00000349124 A0A0B4J2C4 111 aa13.09□□□□□ -0.31
PTP4A3-202ENST00000349124 Q5PR19 223 aa13.09□□□□□ -0.31
PTP4A3-202ENST00000349124 CLUHP3Q96NS8 147 aa13.08□□□□□ -0.32
PTP4A3-202ENST00000349124 A8MTW9 85 aa13.08□□□□□ -0.32
PTP4A3-202ENST00000349124 ZNF415Q09FC8 603 aa13.08□□□□□ -0.32
PTP4A3-202ENST00000349124 VSIG2Q96IQ7 327 aa13.08□□□□□ -0.32
PTP4A3-202ENST00000349124 TRIAP1O43715 76 aa13.07□□□□□ -0.32
PTP4A3-202ENST00000349124 DYNLRB2Q8TF09 96 aa13.07□□□□□ -0.32
PTP4A3-202ENST00000349124 EDA2RQ9HAV5 297 aa13.07□□□□□ -0.32
PTP4A3-202ENST00000349124 CDKN2A-AS1Q9UH64 79 aa13.07□□□□□ -0.32
PTP4A3-202ENST00000349124 NDUFA7O95182 113 aa13.07□□□□□ -0.32
PTP4A3-202ENST00000349124 DEFB114Q30KQ6 69 aa13.07□□□□□ -0.32
PTP4A3-202ENST00000349124 APCP25054 2843 aa13.06□□□□□ -0.32
PTP4A3-202ENST00000349124 COX6A2Q02221 97 aa13.06□□□□□ -0.32
PTP4A3-202ENST00000349124 TINCRA0A1B0GVN0 87 aa13.05□□□□□ -0.32
PTP4A3-202ENST00000349124 A0A1W2PRX2 142 aa13.05□□□□□ -0.32
PTP4A3-202ENST00000349124 IGHV3-53P01767 116 aa13.05□□□□□ -0.32
PTP4A3-202ENST00000349124 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 CR1P17927 2039 aa13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 CRYBA4P53673 196 aa13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 A0A0U1RRA0 63 aa13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 NTN5Q8WTR8 489 aaPredicted RBP13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 BBC3Q96PG8 261 aaPredicted RBP13.04□□□□□ -0.32
PTP4A3-202ENST00000349124 GEMIN7Q9H840 131 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms