RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TAL2Q16559 108 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 CHCHD10Q8WYQ3 142 aaPredicted RBP7.42□□□□□ -1.22
USP54-201ENST00000339859 CLUHP3Q96NS8 147 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 NAV2Q8IVL1 2488 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 PRR9Q5T870 116 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 TRAV8-4A0A0B4J246 113 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 A0A0J9YXV3 536 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 SOCS3O14543 225 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 UBE2AP49459 152 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 IGHV1-58A0A0C4DH39 117 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 CRIP1P50238 77 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 ARHGAP32A7KAX9 2087 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 CACNA1AO00555 2505 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 M0QY20 66 aa7.41□□□□□ -1.22
USP54-201ENST00000339859 A0A1B0GWB2 263 aa7.4□□□□□ -1.22
USP54-201ENST00000339859 SAMD5Q5TGI4 173 aa7.4□□□□□ -1.22
USP54-201ENST00000339859 PIEZO2Q9H5I5 2752 aa7.4□□□□□ -1.22
USP54-201ENST00000339859 Q6ZUT4 128 aa7.4□□□□□ -1.22
USP54-201ENST00000339859 RNASE3P12724 160 aaKnown RBP7.4□□□□□ -1.23
USP54-201ENST00000339859 SPATA3Q8NHX4 192 aa7.4□□□□□ -1.23
USP54-201ENST00000339859 LINC01545Q5VT33 79 aa7.4□□□□□ -1.23
USP54-201ENST00000339859 A0A1B0GXF2 115 aa7.39□□□□□ -1.23
USP54-201ENST00000339859 HIGD2BQ4VC39 106 aa7.39□□□□□ -1.23
USP54-201ENST00000339859 TINCRA0A1B0GVN0 87 aa7.39□□□□□ -1.23
USP54-201ENST00000339859 CRYBA4P53673 196 aa7.39□□□□□ -1.23
USP54-201ENST00000339859 C11orf86A6NJI1 115 aa7.39□□□□□ -1.23
USP54-201ENST00000339859 CARD19Q96LW7 228 aa7.38□□□□□ -1.23
USP54-201ENST00000339859 IFITM1P13164 125 aa7.38□□□□□ -1.23
USP54-201ENST00000339859 C1orf158Q8N1D5 194 aa7.38□□□□□ -1.23
USP54-201ENST00000339859 COX8AP10176 69 aa7.38□□□□□ -1.23
USP54-201ENST00000339859 TRBV6-5A0A0K0K1A5 114 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 K7ERU9 68 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 Q6ZVH6 145 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 KRTAP1-3Q8IUG1 177 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 C7orf33Q8WU49 177 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 Q6ZTC4 211 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 ATRXP46100 2492 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 IGHV4-4A0A075B6R2 117 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 UFSP1Q6NVU6 142 aa7.37□□□□□ -1.23
USP54-201ENST00000339859 SPG11Q96JI7 2443 aa7.36□□□□□ -1.23
USP54-201ENST00000339859 Q8N976 141 aa7.36□□□□□ -1.23
USP54-201ENST00000339859 LOC100131303A0A0U1RQF7 123 aa7.36□□□□□ -1.23
USP54-201ENST00000339859 CHCHD7Q9BUK0 85 aa7.36□□□□□ -1.23
USP54-201ENST00000339859 BVES-AS1Q5T3Y7 98 aa7.36□□□□□ -1.23
USP54-201ENST00000339859 CEMP1Q6PRD7 247 aaPredicted RBP7.35□□□□□ -1.23
USP54-201ENST00000339859 RNASE8Q8TDE3 154 aaKnown RBP7.35□□□□□ -1.23
USP54-201ENST00000339859 B9D2Q9BPU9 175 aa7.35□□□□□ -1.23
USP54-201ENST00000339859 RPL32P62910 135 aaKnown RBP7.35□□□□□ -1.23
USP54-201ENST00000339859 NAV3Q8IVL0 2385 aa7.35□□□□□ -1.23
USP54-201ENST00000339859 IGKV2-24A0A0C4DH68 120 aa7.35□□□□□ -1.23
USP54-201ENST00000339859 LOC105371267A0A1B0GV96 52 aa7.35□□□□□ -1.23
USP54-201ENST00000339859 C11orf21Q9P2W6 132 aa7.35□□□□□ -1.23
USP54-201ENST00000339859 NPSP0C0P6 89 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 UBE2D3P61077 147 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 UBE2D2P62837 147 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 CEND1Q8N111 149 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 PTH2Q96A98 100 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 C2orf82Q6UX34 121 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 SND1-IT1Q9HBX3 110 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 NCR3O14931 201 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 PRM2P04554 102 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 MRPL52Q86TS9 123 aaKnown RBP7.34□□□□□ -1.23
USP54-201ENST00000339859 RBX1P62877 108 aa7.34□□□□□ -1.23
USP54-201ENST00000339859 TLN1Q9Y490 2541 aaKnown RBP7.34□□□□□ -1.24
USP54-201ENST00000339859 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.33□□□□□ -1.24
USP54-201ENST00000339859 RNF185Q96GF1 192 aa7.33□□□□□ -1.24
USP54-201ENST00000339859 C4orf48Q5BLP8 95 aa7.33□□□□□ -1.24
USP54-201ENST00000339859 OPRPNQ99935 248 aaPredicted RBP7.33□□□□□ -1.24
USP54-201ENST00000339859 H3BQ85 93 aa7.33□□□□□ -1.24
USP54-201ENST00000339859 TRBV27A0A0K0K1C4 114 aa7.33□□□□□ -1.24
USP54-201ENST00000339859 FHL2Q14192 279 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 C1orf134Q5TEV5 83 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 CD164L2Q6UWJ8 174 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 PRO1854Q9UHT4 67 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 NOTCH2Q04721 2471 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 A0A1B0GV72 72 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 SYCNQ0VAF6 134 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 MPV17L2Q567V2 206 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 LINC00474Q9P2X8 69 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 PYGO1Q9Y3Y4 419 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 ANKRD11Q6UB99 2663 aaPredicted RBP7.32□□□□□ -1.24
USP54-201ENST00000339859 HIVEP3Q5T1R4 2406 aa7.32□□□□□ -1.24
USP54-201ENST00000339859 TSHBP01222 138 aa7.31□□□□□ -1.24
USP54-201ENST00000339859 E9PLD3 99 aa7.31□□□□□ -1.24
USP54-201ENST00000339859 WFDC9Q8NEX5 89 aa7.31□□□□□ -1.24
USP54-201ENST00000339859 IGLV4-3A0A075B6K6 122 aa7.31□□□□□ -1.24
USP54-201ENST00000339859 DEFB105AQ8NG35 78 aa7.31□□□□□ -1.24
USP54-201ENST00000339859 CSPG4Q6UVK1 2322 aa7.31□□□□□ -1.24
USP54-201ENST00000339859 PYY3Q5JQD4 70 aa7.3□□□□□ -1.24
USP54-201ENST00000339859 LOC107984640A0A0U1RRK4 108 aa7.3□□□□□ -1.24
USP54-201ENST00000339859 ZNF462Q96JM2 2506 aa7.3□□□□□ -1.24
USP54-201ENST00000339859 MRPS36P82909 103 aaKnown RBP7.3□□□□□ -1.24
USP54-201ENST00000339859 SBSPONQ8IVN8 264 aa7.3□□□□□ -1.24
USP54-201ENST00000339859 IGLV4-69A0A075B6H9 119 aa7.3□□□□□ -1.24
USP54-201ENST00000339859 KLK9Q2XQG4 91 aa7.3□□□□□ -1.24
USP54-201ENST00000339859 DSCR8Q96T75 97 aa7.3□□□□□ -1.24
USP54-201ENST00000339859 TRBV20-1A0A075B6N2 111 aa7.29□□□□□ -1.24
USP54-201ENST00000339859 COA6Q5JTJ3 125 aaKnown RBP7.29□□□□□ -1.24
USP54-201ENST00000339859 DIRC1Q969H9 104 aa7.29□□□□□ -1.24
USP54-201ENST00000339859 COX8CQ7Z4L0 72 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms