RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ZFAND6Q6FIF0 208 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 CST9LQ9H4G1 147 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 NDUFA12Q9UI09 145 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 TRAV8-2A0A0B4J237 113 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 JPT2Q9H910 190 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 TRAV4A0A0B4J268 109 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 IGLV2-11P01706 119 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 TAL2Q16559 108 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 GYPEP15421 78 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 LINC00322Q6ZN03 302 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-201ENST00000335508 TRAV12-1A0A0B4J245 112 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 ZNF561-AS1K7EIQ3 104 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 K7EQD1 137 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 ANGP03950 147 aaKnown RBP5.11□□□□□ -1.59
SF3B1-201ENST00000335508 IFITM1P13164 125 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 NHP2Q9NX24 153 aaKnown RBP5.11□□□□□ -1.59
SF3B1-201ENST00000335508 FGF6P10767 208 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 LINC00158P58513 81 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 DEFB125Q8N687 156 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 MDFICQ9P1T7 246 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 DEFB1P60022 68 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 SUMO4Q6EEV6 95 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 J3QQQ9 107 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 LINC01545Q5VT33 79 aa5.11□□□□□ -1.59
SF3B1-201ENST00000335508 TRBV27A0A0K0K1C4 114 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 SLC25A20O43772 301 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 Q6ZVH6 145 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 TRBV20-1A0A075B6N2 111 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 C4orf48Q5BLP8 95 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 HHLA3Q9XRX5 114 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 FHL3Q13643 280 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 TM2D2Q9BX73 214 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 UBE2V1Q13404 147 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 FAM222AQ5U5X8 452 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 UBE2WQ96B02 151 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 ERG28Q9UKR5 140 aa5.1□□□□□ -1.59
SF3B1-201ENST00000335508 GAGE6Q13070 117 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 BRCA2P51587 3418 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 CXCL5P42830 114 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 C9orf153Q5TBE3 101 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 Q6ZTI0 123 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 KLK5Q9Y337 293 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-201ENST00000335508 CHCHD7Q9BUK0 85 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 A0A096LNT2 108 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 COX8AP10176 69 aa5.09□□□□□ -1.59
SF3B1-201ENST00000335508 GATA1P15976 413 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-201ENST00000335508 KALRNO60229 2985 aa5.09□□□□□ -1.6
SF3B1-201ENST00000335508 TRAV26-2A0A0B4J265 109 aa5.09□□□□□ -1.6
SF3B1-201ENST00000335508 A0A0J9YXV3 536 aa5.09□□□□□ -1.6
SF3B1-201ENST00000335508 IGLL1P15814 213 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 ZNF664Q8N3J9 261 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 SPRY2O43597 315 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 MPV17L2Q567V2 206 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 WFDC9Q8NEX5 89 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 OVOL2Q9BRP0 275 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 PTH2Q96A98 100 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 REV3LO60673 3130 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 LAMA2P24043 3122 aaKnown RBP5.08□□□□□ -1.6
SF3B1-201ENST00000335508 G3V4G9 280 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 C9orf85Q96MD7 179 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 POLR2KP53803 58 aaKnown RBP5.08□□□□□ -1.6
SF3B1-201ENST00000335508 STPG4Q8N801 248 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 C11orf45Q8TAV5 145 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 SPCS1Q9Y6A9 102 aa5.08□□□□□ -1.6
SF3B1-201ENST00000335508 IGHV3-38A0A0C4DH36 116 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 GATD1Q8NB37 220 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 TANC2Q9HCD6 1990 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 H7C423 109 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 CRIP1P50238 77 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 LINC00482Q8N8I6 264 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 PYGO1Q9Y3Y4 419 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 hDV102S1A0JD36 115 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 RNASE3P12724 160 aaKnown RBP5.07□□□□□ -1.6
SF3B1-201ENST00000335508 SLC25A29Q8N8R3 303 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 RPL39LQ96EH5 51 aaKnown RBP5.07□□□□□ -1.6
SF3B1-201ENST00000335508 AMTNQ6UX39 209 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 SMR3AQ99954 134 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 ESM1Q9NQ30 184 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 PCSK5Q92824 1860 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 COL12A1Q99715 3063 aa5.07□□□□□ -1.6
SF3B1-201ENST00000335508 M0QY20 66 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 LEPROTO15243 131 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 SOCS3O14543 225 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 C11orf68Q9H3H3 251 aaKnown RBP5.06□□□□□ -1.6
SF3B1-201ENST00000335508 A0A0J9YY99 117 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 CRYGDP07320 174 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 C20orf173Q96LM9 149 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 ATMQ13315 3056 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 VSIG2Q96IQ7 327 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 VPS13AQ96RL7 3174 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 C5orf42Q9H799 3197 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 C11orf21Q9P2W6 132 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 RS1O15537 224 aa5.06□□□□□ -1.6
SF3B1-201ENST00000335508 RNF183Q96D59 192 aa5.05□□□□□ -1.6
SF3B1-201ENST00000335508 H3BUT2 72 aa5.05□□□□□ -1.6
SF3B1-201ENST00000335508 NDUFC2O95298 119 aa5.05□□□□□ -1.6
SF3B1-201ENST00000335508 HIGD1BQ9P298 99 aa5.05□□□□□ -1.6
SF3B1-201ENST00000335508 TRAV10A0A0B4J240 114 aa5.05□□□□□ -1.6
SF3B1-201ENST00000335508 A0A1B0GWB2 263 aa5.05□□□□□ -1.6
SF3B1-201ENST00000335508 COX7A2LO14548 114 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms