RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 C15orf53Q8NAA6 179 aa10.73□□□□□ -0.69
SSBP3-201ENST00000326956 DUX3Q96PT4 197 aa10.73□□□□□ -0.69
SSBP3-201ENST00000326956 SPANXDQ9BXN6 97 aa10.73□□□□□ -0.69
SSBP3-201ENST00000326956 SPANXCQ9NY87 97 aa10.73□□□□□ -0.69
SSBP3-201ENST00000326956 ADAMTSL4-AS1Q5T5F5 129 aa10.72□□□□□ -0.69
SSBP3-201ENST00000326956 IGHV4-30-2A0A087WSY4 118 aa10.72□□□□□ -0.69
SSBP3-201ENST00000326956 VSIG2Q96IQ7 327 aa10.72□□□□□ -0.69
SSBP3-201ENST00000326956 LITAFQ99732 161 aa10.72□□□□□ -0.69
SSBP3-201ENST00000326956 TINCRA0A1B0GVN0 87 aa10.71□□□□□ -0.69
SSBP3-201ENST00000326956 B5MCH6 92 aa10.71□□□□□ -0.69
SSBP3-201ENST00000326956 IFITM1P13164 125 aa10.71□□□□□ -0.69
SSBP3-201ENST00000326956 NDUFV3P56181 108 aaKnown RBP10.71□□□□□ -0.69
SSBP3-201ENST00000326956 SPANXA1Q9NS26 97 aa10.71□□□□□ -0.69
SSBP3-201ENST00000326956 H3BT86 120 aa10.71□□□□□ -0.69
SSBP3-201ENST00000326956 CRLF1O75462 422 aa10.71□□□□□ -0.69
SSBP3-201ENST00000326956 SS18L2Q9UHA2 77 aa10.71□□□□□ -0.69
SSBP3-201ENST00000326956 A8MZ25 164 aa10.71□□□□□ -0.7
SSBP3-201ENST00000326956 IGHV4-59P01825 116 aa10.71□□□□□ -0.7
SSBP3-201ENST00000326956 DGAT2L7PQ6IED9 249 aa10.71□□□□□ -0.7
SSBP3-201ENST00000326956 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.7□□□□□ -0.7
SSBP3-201ENST00000326956 IGKV2-29A2NJV5 120 aaPredicted RBP10.7□□□□□ -0.7
SSBP3-201ENST00000326956 CLEC2BQ92478 149 aa10.7□□□□□ -0.7
SSBP3-201ENST00000326956 H7C423 109 aa10.7□□□□□ -0.7
SSBP3-201ENST00000326956 CIRBPQ14011 172 aaKnown RBP10.7□□□□□ -0.7
SSBP3-201ENST00000326956 B4DSR2 109 aa10.69□□□□□ -0.7
SSBP3-201ENST00000326956 GNLYP22749 145 aa10.69□□□□□ -0.7
SSBP3-201ENST00000326956 DEFB131AP59861 70 aa10.69□□□□□ -0.7
SSBP3-201ENST00000326956 ZNF415Q09FC8 603 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 Q6ZSV7 163 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 TMEM89A2RUT3 159 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 GAGE12JA6NER3 117 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 GAGE7O76087 117 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 AVPP01185 164 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 GAGE12FP0CL80 117 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 GAGE12GP0CL81 117 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 GAGE12IP0CL82 117 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 HOXD3P31249 432 aaPredicted RBP10.68□□□□□ -0.7
SSBP3-201ENST00000326956 GAGE4Q13068 117 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 TMEM61Q8N0U2 210 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 EDA2RQ9HAV5 297 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 IGHV3-38A0A0C4DH36 116 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 DEFB112Q30KQ8 113 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 UBE2D4Q9Y2X8 147 aa10.68□□□□□ -0.7
SSBP3-201ENST00000326956 NCOR2Q9Y618 2525 aa10.67□□□□□ -0.7
SSBP3-201ENST00000326956 RBMY1A1P0DJD3 496 aaKnown RBP10.67□□□□□ -0.7
SSBP3-201ENST00000326956 RBMY1CP0DJD4 496 aa10.67□□□□□ -0.7
SSBP3-201ENST00000326956 RBMY1FQ15415 496 aaKnown RBP10.67□□□□□ -0.7
SSBP3-201ENST00000326956 Q6Q795 121 aa10.67□□□□□ -0.7
SSBP3-201ENST00000326956 DAND5Q8N907 189 aa10.67□□□□□ -0.7
SSBP3-201ENST00000326956 LINC01600Q96MT4 127 aa10.67□□□□□ -0.7
SSBP3-201ENST00000326956 LST1O00453 97 aa10.66□□□□□ -0.7
SSBP3-201ENST00000326956 FAM104AQ969W3 186 aa10.66□□□□□ -0.7
SSBP3-201ENST00000326956 CHCHD7Q9BUK0 85 aa10.66□□□□□ -0.7
SSBP3-201ENST00000326956 NHLRC4P0CG21 123 aaPredicted RBP10.66□□□□□ -0.7
SSBP3-201ENST00000326956 LINC00467Q9BRT7 94 aa10.66□□□□□ -0.7
SSBP3-201ENST00000326956 PRM2P04554 102 aa10.65□□□□□ -0.7
SSBP3-201ENST00000326956 CDKN2A-AS1Q9UH64 79 aa10.65□□□□□ -0.7
SSBP3-201ENST00000326956 LINC01587Q99440 93 aa10.65□□□□□ -0.7
SSBP3-201ENST00000326956 Q9UF83 564 aa10.65□□□□□ -0.7
SSBP3-201ENST00000326956 CELSR1Q9NYQ6 3014 aa10.65□□□□□ -0.71
SSBP3-201ENST00000326956 TIMM17BO60830 172 aa10.64□□□□□ -0.71
SSBP3-201ENST00000326956 RNF152Q8N8N0 203 aa10.64□□□□□ -0.71
SSBP3-201ENST00000326956 A0A0U1RRA0 63 aa10.64□□□□□ -0.71
SSBP3-201ENST00000326956 Q6ZSN1 163 aa10.64□□□□□ -0.71
SSBP3-201ENST00000326956 CITED2Q99967 270 aaPredicted RBP10.63□□□□□ -0.71
SSBP3-201ENST00000326956 NACAE9PAV3 2078 aa10.63□□□□□ -0.71
SSBP3-201ENST00000326956 MAP1AP78559 2803 aaPredicted RBP10.63□□□□□ -0.71
SSBP3-201ENST00000326956 SPTBN4Q9H254 2564 aa10.63□□□□□ -0.71
SSBP3-201ENST00000326956 MRPL23Q16540 153 aaKnown RBP10.63□□□□□ -0.71
SSBP3-201ENST00000326956 DNAJC30Q96LL9 226 aa10.63□□□□□ -0.71
SSBP3-201ENST00000326956 ZNF625Q96I27 306 aaPredicted RBP10.62□□□□□ -0.71
SSBP3-201ENST00000326956 CCDC179H3BU77 68 aa10.62□□□□□ -0.71
SSBP3-201ENST00000326956 NDUFA1O15239 70 aa10.62□□□□□ -0.71
SSBP3-201ENST00000326956 TMEM101Q96IK0 257 aa10.62□□□□□ -0.71
SSBP3-201ENST00000326956 UBE2E2Q96LR5 201 aa10.62□□□□□ -0.71
SSBP3-201ENST00000326956 Q9H8V8 135 aa10.62□□□□□ -0.71
SSBP3-201ENST00000326956 ZFHX3Q15911 3703 aa10.62□□□□□ -0.71
SSBP3-201ENST00000326956 CHD8Q9HCK8 2581 aa10.62□□□□□ -0.71
SSBP3-201ENST00000326956 PIK3CD-AS1Q5SR53 167 aa10.61□□□□□ -0.71
SSBP3-201ENST00000326956 COPS9Q8WXC6 57 aa10.61□□□□□ -0.71
SSBP3-201ENST00000326956 TIRAPP58753 221 aa10.61□□□□□ -0.71
SSBP3-201ENST00000326956 FAM240AA0A1B0GVK7 77 aa10.61□□□□□ -0.71
SSBP3-201ENST00000326956 IGHV3-53P01767 116 aa10.61□□□□□ -0.71
SSBP3-201ENST00000326956 MEIG1Q5JSS6 88 aa10.61□□□□□ -0.71
SSBP3-201ENST00000326956 HERVK_113P63121 156 aa10.6□□□□□ -0.71
SSBP3-201ENST00000326956 SLURP1P55000 103 aa10.6□□□□□ -0.71
SSBP3-201ENST00000326956 DEFB136Q30KP8 78 aa10.59□□□□□ -0.71
SSBP3-201ENST00000326956 LINC00308Q8TCZ7 52 aa10.59□□□□□ -0.71
SSBP3-201ENST00000326956 DYNLRB2Q8TF09 96 aa10.59□□□□□ -0.71
SSBP3-201ENST00000326956 COL12A1Q99715 3063 aa10.59□□□□□ -0.71
SSBP3-201ENST00000326956 KHDC1LQ5JSQ8 128 aa10.58□□□□□ -0.72
SSBP3-201ENST00000326956 RBMY1BA6NDE4 496 aaKnown RBP10.58□□□□□ -0.72
SSBP3-201ENST00000326956 RBMY1EA6NEQ0 496 aaKnown RBP10.58□□□□□ -0.72
SSBP3-201ENST00000326956 RBMY1DP0C7P1 496 aaKnown RBP10.58□□□□□ -0.72
SSBP3-201ENST00000326956 LINC01356Q8N9X3 169 aa10.58□□□□□ -0.72
SSBP3-201ENST00000326956 VPREB3Q9UKI3 123 aa10.58□□□□□ -0.72
SSBP3-201ENST00000326956 INSP01308 110 aa10.57□□□□□ -0.72
SSBP3-201ENST00000326956 PRIMA1Q86XR5 153 aa10.57□□□□□ -0.72
SSBP3-201ENST00000326956 PEMTQ9UBM1 199 aa10.57□□□□□ -0.72
SSBP3-201ENST00000326956 TRAV13-1A0A0B4J241 112 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms