RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 SIRPDQ9H106 197 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 IGLL5B9A064 214 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 RPL28P46779 137 aaKnown RBP3.06□□□□□ -1.92
USH2A-201ENST00000307340 B9D2Q9BPU9 175 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 NDUFS5O43920 106 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 F8P00451 2351 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 CLPSL1A2RUU4 121 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 APRG1Q8IVJ8 170 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 SONP18583 2426 aaKnown RBP3.06□□□□□ -1.92
USH2A-201ENST00000307340 SPINK13Q1W4C9 94 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 MUSTN1Q8IVN3 82 aa3.06□□□□□ -1.92
USH2A-201ENST00000307340 ETDCA0A1B0GVM5 59 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 CRYGBP07316 175 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 ZFYVE26Q68DK2 2539 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 BLCAPP62952 87 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 HAMPP81172 84 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 ZFAND2AQ8N6M9 145 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 UBE2D4Q9Y2X8 147 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 CEP350Q5VT06 3117 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 CEP295Q9C0D2 2601 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 SMAD5-AS1Q9Y6J3 95 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 TLN2Q9Y4G6 2542 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 IGHV3-48P01763 117 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 Q8TAT8 98 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 FAM236AA0A1B0GUQ0 79 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 FAM236BA0A1B0GV22 79 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 FAM120AOSQ5T036 256 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 M0QY20 66 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 TMEM223A0PJW6 202 aa3.05□□□□□ -1.92
USH2A-201ENST00000307340 IGHV3-30-3P0DP02 117 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 NDUFA7O95182 113 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 SERTAD4-AS1Q5TG53 156 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 C8orf49Q96NF6 230 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 DEFB114Q30KQ6 69 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 C3orf22Q8N5N4 141 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 PINLYPA6NC86 204 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 FAM19A3Q7Z5A8 133 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 UPK3BQ9BT76 320 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 FAM30AQ9NZY2 134 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 F5H768 121 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 PCNTO95613 3336 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 COX7CP15954 63 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 RPL37AP61513 92 aaKnown RBP3.04□□□□□ -1.92
USH2A-201ENST00000307340 J3QKU1 62 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 LST1O00453 97 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 A0A087WWL8 130 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 TRBV6-8A0A0A6YYG3 113 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 NAV2Q8IVL1 2488 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 K7EQG2 157 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 RNF224P0DH78 156 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 IGKV1OR2-108A0A075B7D4 117 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 IGHV4-59P01825 116 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 CAMK2N2Q96S95 79 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 CHKB-CPT1BH3BT56 60 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 LINC00527Q9UJ94 153 aa3.04□□□□□ -1.92
USH2A-201ENST00000307340 GATA1P15976 413 aaPredicted RBP3.03□□□□□ -1.92
USH2A-201ENST00000307340 ERC2-IT1O76042 136 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 FANCD2OSQ96PS1 177 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 Q6YL49 198 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 RPL18AQ02543 176 aaKnown RBP3.03□□□□□ -1.92
USH2A-201ENST00000307340 Q8N6K4 173 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 UBE2D3P61077 147 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 NDPQ00604 133 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 LINC00322Q6ZN03 302 aaPredicted RBP3.03□□□□□ -1.92
USH2A-201ENST00000307340 hDV103S1A0JD37 113 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 LYPD2Q6UXB3 125 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 TMEM61Q8N0U2 210 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 A0A0C4DFX4 3053 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 C10orf55Q5SWW7 151 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 ZFAND3Q9H8U3 227 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 ZFHX2Q9C0A1 2572 aaPredicted RBP3.03□□□□□ -1.92
USH2A-201ENST00000307340 TRAV23DV6A0A075B6W5 121 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 IGHV3-11P01762 117 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 C9orf85Q96MD7 179 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 A0A0J9YY99 117 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 IGKV3-20P01619 116 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 SHISA2Q6UWI4 295 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 HILS1P60008 231 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 CFAP126Q5VTH2 177 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 CCDC168Q8NDH2 2452 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 BPY2O14599 106 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 IGHV3-30P01768 117 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 IGHV3-30-5P0DP03 117 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 ZNF80P51504 273 aaPredicted RBP3.03□□□□□ -1.92
USH2A-201ENST00000307340 ANKRD39Q53RE8 183 aa3.03□□□□□ -1.92
USH2A-201ENST00000307340 IGHV3-66A0A0C4DH42 116 aa3.03□□□□□ -1.93
USH2A-201ENST00000307340 IGLV1-40P01703 118 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 DKK2Q9UBU2 259 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 IGHV3-16A0A0C4DH30 117 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 M0R378 163 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 COX7BP24311 80 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 C2orf48Q96LS8 159 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 POLR2KP53803 58 aaKnown RBP3.02□□□□□ -1.93
USH2A-201ENST00000307340 TRAV7A0A075B6U4 112 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 ESM1Q9NQ30 184 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 LINC00308Q8TCZ7 52 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 LIMD2Q9BT23 127 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 TRBV7-7A0A0K0K1E9 115 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 IGLV2-11P01706 119 aa3.02□□□□□ -1.93
USH2A-201ENST00000307340 NTN5Q8WTR8 489 aaPredicted RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms