RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MIAQ16674 131 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 C16orf54Q6UWD8 224 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 ZMAT4Q9H898 229 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 K7EIM0 57 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 C4orf48Q5BLP8 95 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 IGLC6P0CF74 106 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 IGKV1-17P01599 117 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 COX7BP24311 80 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 IGHV3-30P01768 117 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 IGHV3-33P01772 117 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 IGHV3-30-3P0DP02 117 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 IGHV3-30-5P0DP03 117 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 TTTY13Q9BZ97 58 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 RITA1Q96K30 269 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 C10orf142B7Z368 130 aa7.6□□□□□ -1.19
COL6A3-201ENST00000295550 A6NED7 52 aa7.59□□□□□ -1.19
COL6A3-201ENST00000295550 SPATA12Q7Z6I5 190 aa7.59□□□□□ -1.19
COL6A3-201ENST00000295550 IGLV11-55A0A075B6I3 123 aa7.59□□□□□ -1.19
COL6A3-201ENST00000295550 J3QLI3 93 aa7.59□□□□□ -1.19
COL6A3-201ENST00000295550 TEX22C9J3V5 150 aa7.59□□□□□ -1.19
COL6A3-201ENST00000295550 A0A1W2PNU3 283 aaPredicted RBP7.59□□□□□ -1.19
COL6A3-201ENST00000295550 MSRB1Q9NZV6 116 aa7.59□□□□□ -1.19
COL6A3-201ENST00000295550 PRRC2CQ9Y520 2896 aaKnown RBP7.58□□□□□ -1.2
COL6A3-201ENST00000295550 ELANEP08246 267 aa7.58□□□□□ -1.2
COL6A3-201ENST00000295550 NFE4Q86UQ8 179 aa7.58□□□□□ -1.2
COL6A3-201ENST00000295550 BRWD1-AS2P59051 145 aa7.58□□□□□ -1.2
COL6A3-201ENST00000295550 ENHOQ6UWT2 76 aa7.58□□□□□ -1.2
COL6A3-201ENST00000295550 VPREB3Q9UKI3 123 aa7.58□□□□□ -1.2
COL6A3-201ENST00000295550 Q96MF0 132 aa7.58□□□□□ -1.2
COL6A3-201ENST00000295550 IGHV1-58A0A0C4DH39 117 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 APRG1Q8IVJ8 170 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 CCL24O00175 119 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 MIR7-3HGQ8N6C7 128 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 HIST2H2BDQ6DRA6 164 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 A0A1B0GXF2 115 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 PIK3CD-AS1Q5SR53 167 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 C19orf71A6NCJ1 209 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 WFDC11Q8NEX6 87 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 B9D2Q9BPU9 175 aa7.57□□□□□ -1.2
COL6A3-201ENST00000295550 NDUFC1O43677 76 aa7.56□□□□□ -1.2
COL6A3-201ENST00000295550 SLURP1P55000 103 aa7.56□□□□□ -1.2
COL6A3-201ENST00000295550 C10orf105Q8TEF2 133 aa7.56□□□□□ -1.2
COL6A3-201ENST00000295550 SPAG11BQ08648 103 aa7.56□□□□□ -1.2
COL6A3-201ENST00000295550 CTSGP08311 255 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 C1orf195Q5TG92 126 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 IGHV4-59P01825 116 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 TM2D2Q9BX73 214 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 COL4A2P08572 1712 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 IGHV7-81A0A0B4J1V7 117 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 WFDC10BQ8IUB3 73 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 IGKV1D-37A0A075B6S9 117 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 HHLA3Q9XRX5 114 aa7.55□□□□□ -1.2
COL6A3-201ENST00000295550 IGLV2-8P01709 118 aa7.54□□□□□ -1.2
COL6A3-201ENST00000295550 F8W735 103 aaPredicted RBP7.54□□□□□ -1.2
COL6A3-201ENST00000295550 WT1P19544 449 aaPredicted RBP7.54□□□□□ -1.2
COL6A3-201ENST00000295550 IGLV1-47P01700 117 aa7.54□□□□□ -1.2
COL6A3-201ENST00000295550 SPART-AS1P0CW21 52 aa7.54□□□□□ -1.2
COL6A3-201ENST00000295550 CCL18P55774 89 aa7.54□□□□□ -1.2
COL6A3-201ENST00000295550 SNURFQ9Y675 71 aa7.54□□□□□ -1.2
COL6A3-201ENST00000295550 LOXL1Q08397 574 aaPredicted RBP7.54□□□□□ -1.2
COL6A3-201ENST00000295550 TIMM17BO60830 172 aa7.53□□□□□ -1.2
COL6A3-201ENST00000295550 FRMD6-AS1P0C7T7 363 aa7.53□□□□□ -1.2
COL6A3-201ENST00000295550 E7EUB6 86 aa7.53□□□□□ -1.2
COL6A3-201ENST00000295550 MSMPQ1L6U9 139 aa7.53□□□□□ -1.2
COL6A3-201ENST00000295550 SCXQ7RTU7 201 aa7.53□□□□□ -1.2
COL6A3-201ENST00000295550 C2orf70A6NJV1 201 aa7.52□□□□□ -1.2
COL6A3-201ENST00000295550 BLCAPP62952 87 aa7.52□□□□□ -1.2
COL6A3-201ENST00000295550 SERP2Q8N6R1 65 aa7.52□□□□□ -1.21
COL6A3-201ENST00000295550 A0A0J9YXY3 114 aa7.52□□□□□ -1.21
COL6A3-201ENST00000295550 MDFICQ9P1T7 246 aa7.52□□□□□ -1.21
COL6A3-201ENST00000295550 CCDC179H3BU77 68 aa7.51□□□□□ -1.21
COL6A3-201ENST00000295550 C20orf173Q96LM9 149 aa7.51□□□□□ -1.21
COL6A3-201ENST00000295550 MED14OSP0DP75 135 aa7.51□□□□□ -1.21
COL6A3-201ENST00000295550 FAM19A3Q7Z5A8 133 aa7.51□□□□□ -1.21
COL6A3-201ENST00000295550 GRNP28799 593 aaKnown RBP7.5□□□□□ -1.21
COL6A3-201ENST00000295550 CHD8Q9HCK8 2581 aa7.5□□□□□ -1.21
COL6A3-201ENST00000295550 CENPVL3A0A0U1RRI6 287 aa7.5□□□□□ -1.21
COL6A3-201ENST00000295550 DAZAP2Q15038 168 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-201ENST00000295550 TRIAP1O43715 76 aa7.5□□□□□ -1.21
COL6A3-201ENST00000295550 TMEM263Q8WUH6 116 aaKnown RBP7.5□□□□□ -1.21
COL6A3-201ENST00000295550 MBD6Q96DN6 1003 aa7.5□□□□□ -1.21
COL6A3-201ENST00000295550 FASNP49327 2511 aaKnown RBP7.5□□□□□ -1.21
COL6A3-201ENST00000295550 LYRM9A8MSI8 78 aa7.5□□□□□ -1.21
COL6A3-201ENST00000295550 PRAC2D3DTV9 90 aa7.5□□□□□ -1.21
COL6A3-201ENST00000295550 C5orf56Q8N8D9 126 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 TP73-AS1Q9UF72 201 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 KLK12Q9UKR0 248 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 ODF3BA8MYP8 253 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 GDF5OSQ5U4N7 250 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 FSTL3O95633 263 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 C9orf66Q5T8R8 295 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 P0DMU3 169 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 FAM231AP0DMU4 169 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 FAM231CP0DMU5 169 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 ESM1Q9NQ30 184 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 A0A0J9YWU9 116 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 UFSP1Q6NVU6 142 aa7.49□□□□□ -1.21
COL6A3-201ENST00000295550 C1orf229Q6ZS94 237 aaPredicted RBP7.49□□□□□ -1.21
COL6A3-201ENST00000295550 CEP295Q9C0D2 2601 aa7.48□□□□□ -1.21
COL6A3-201ENST00000295550 PCSK5Q92824 1860 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms