RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 NXPH4O95158 308 aa9.54□□□□□ -0.88
COL8A1-202ENST00000273342 ODF3Q96PU9 254 aa9.54□□□□□ -0.88
COL8A1-202ENST00000273342 IGHV3-38A0A0C4DH36 116 aa9.54□□□□□ -0.88
COL8A1-202ENST00000273342 LGALS9O00182 355 aa9.54□□□□□ -0.88
COL8A1-202ENST00000273342 H3BMM0 161 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 IFITM1P13164 125 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 UBE2WQ96B02 151 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 HIST2H2BDQ6DRA6 164 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 POM121L12Q8N7R1 296 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 A0A0B4J2C4 111 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 ID1P41134 155 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 DCANP1Q8TF63 244 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 NDUFA12Q9UI09 145 aa9.53□□□□□ -0.88
COL8A1-202ENST00000273342 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.52□□□□□ -0.89
COL8A1-202ENST00000273342 GAGE12JA6NER3 117 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 I3L3M4 83 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 M0R2P5 195 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 GAGE7O76087 117 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 GAGE12FP0CL80 117 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 GAGE12GP0CL81 117 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 GAGE12IP0CL82 117 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 GNLYP22749 145 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 GAGE4Q13068 117 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 KLK9Q2XQG4 91 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 C19orf54Q5BKX5 351 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 APRG1Q8IVJ8 170 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.52□□□□□ -0.89
COL8A1-202ENST00000273342 IGKV2-29A2NJV5 120 aaPredicted RBP9.52□□□□□ -0.89
COL8A1-202ENST00000273342 H7C423 109 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 IGHV1-69P01742 117 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 SMIM20Q8N5G0 67 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 ICOSQ9Y6W8 199 aa9.52□□□□□ -0.89
COL8A1-202ENST00000273342 NAV2Q8IVL1 2488 aa9.51□□□□□ -0.89
COL8A1-202ENST00000273342 TRBV10-2A0A0K0K1G8 114 aa9.51□□□□□ -0.89
COL8A1-202ENST00000273342 IGHV1OR15-1A0A075B7D0 117 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 RPL32P62910 135 aaKnown RBP9.5□□□□□ -0.89
COL8A1-202ENST00000273342 CFAP161Q6P656 301 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 NSUN5P1Q3KNT7 163 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 CHCHD5Q9BSY4 110 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 IGHV4-61A0A0C4DH41 118 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 TRBV6-5A0A0K0K1A5 114 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 USMG5Q96IX5 58 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 C9orf85Q96MD7 179 aa9.5□□□□□ -0.89
COL8A1-202ENST00000273342 LITAFQ99732 161 aa9.49□□□□□ -0.89
COL8A1-202ENST00000273342 RPL13AP40429 203 aaKnown RBP9.49□□□□□ -0.89
COL8A1-202ENST00000273342 SYNJ2BPP57105 145 aa9.49□□□□□ -0.89
COL8A1-202ENST00000273342 RHOHQ15669 191 aa9.48□□□□□ -0.89
COL8A1-202ENST00000273342 IGHG2P01859 326 aa9.48□□□□□ -0.89
COL8A1-202ENST00000273342 EPG5Q9HCE0 2579 aa9.48□□□□□ -0.89
COL8A1-202ENST00000273342 A0A0J9YX75 114 aa9.48□□□□□ -0.89
COL8A1-202ENST00000273342 TRBV30A0A0K0K1B3 111 aa9.48□□□□□ -0.89
COL8A1-202ENST00000273342 COX6CP09669 75 aa9.48□□□□□ -0.89
COL8A1-202ENST00000273342 FBN2P35556 2912 aa9.47□□□□□ -0.89
COL8A1-202ENST00000273342 ZNF462Q96JM2 2506 aa9.47□□□□□ -0.89
COL8A1-202ENST00000273342 SNRPD3P62318 126 aaKnown RBP9.47□□□□□ -0.89
COL8A1-202ENST00000273342 Q6ZSN1 163 aa9.47□□□□□ -0.89
COL8A1-202ENST00000273342 FAM104AQ969W3 186 aa9.47□□□□□ -0.89
COL8A1-202ENST00000273342 TNFRSF18Q9Y5U5 241 aa9.47□□□□□ -0.89
COL8A1-202ENST00000273342 ANKRD17O75179 2603 aaKnown RBP9.47□□□□□ -0.89
COL8A1-202ENST00000273342 JMJD1CQ15652 2540 aa9.46□□□□□ -0.89
COL8A1-202ENST00000273342 RBMY1A1P0DJD3 496 aaKnown RBP9.46□□□□□ -0.89
COL8A1-202ENST00000273342 RBMY1CP0DJD4 496 aa9.46□□□□□ -0.89
COL8A1-202ENST00000273342 RBMY1FQ15415 496 aaKnown RBP9.46□□□□□ -0.89
COL8A1-202ENST00000273342 MEIG1Q5JSS6 88 aa9.46□□□□□ -0.9
COL8A1-202ENST00000273342 IGHV1-58A0A0C4DH39 117 aa9.45□□□□□ -0.9
COL8A1-202ENST00000273342 HERV-K104P63124 156 aa9.45□□□□□ -0.9
COL8A1-202ENST00000273342 TRGV11A0A075B6L2 103 aa9.45□□□□□ -0.9
COL8A1-202ENST00000273342 CDKN2A-AS1Q9UH64 79 aa9.45□□□□□ -0.9
COL8A1-202ENST00000273342 TRBV7-9A0A0J9YWB2 115 aa9.45□□□□□ -0.9
COL8A1-202ENST00000273342 ATP5J2P56134 94 aa9.45□□□□□ -0.9
COL8A1-202ENST00000273342 VSIG2Q96IQ7 327 aa9.44□□□□□ -0.9
COL8A1-202ENST00000273342 MTORP42345 2549 aa9.44□□□□□ -0.9
COL8A1-202ENST00000273342 NDUFA7O95182 113 aa9.44□□□□□ -0.9
COL8A1-202ENST00000273342 MIAQ16674 131 aa9.44□□□□□ -0.9
COL8A1-202ENST00000273342 SHISA2Q6UWI4 295 aa9.44□□□□□ -0.9
COL8A1-202ENST00000273342 MXRA5Q9NR99 2828 aa9.43□□□□□ -0.9
COL8A1-202ENST00000273342 AVPP01185 164 aa9.43□□□□□ -0.9
COL8A1-202ENST00000273342 LINC00467Q9BRT7 94 aa9.43□□□□□ -0.9
COL8A1-202ENST00000273342 MRPS36P82909 103 aaKnown RBP9.43□□□□□ -0.9
COL8A1-202ENST00000273342 TMEM61Q8N0U2 210 aa9.43□□□□□ -0.9
COL8A1-202ENST00000273342 NF1P21359 2839 aa9.43□□□□□ -0.9
COL8A1-202ENST00000273342 IGSF10Q6WRI0 2623 aa9.43□□□□□ -0.9
COL8A1-202ENST00000273342 ACANP16112 2415 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 A6NDX4 124 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 IGLV1-40P01703 118 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.42□□□□□ -0.9
COL8A1-202ENST00000273342 DEFB136Q30KP8 78 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 TEX15Q9BXT5 2789 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 IGHV4-30-2A0A087WSY4 118 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 IGHV4-59P01825 116 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 DGAT2L7PQ6IED9 249 aa9.42□□□□□ -0.9
COL8A1-202ENST00000273342 NIPBLQ6KC79 2804 aaeCLIP9.41□□□□□ -0.9
COL8A1-202ENST00000273342 DEFB131AP59861 70 aa9.41□□□□□ -0.9
COL8A1-202ENST00000273342 NOTCH2Q04721 2471 aa9.41□□□□□ -0.9
COL8A1-202ENST00000273342 IGHV3OR16-12A0A075B7B8 117 aa9.41□□□□□ -0.9
COL8A1-202ENST00000273342 K7EQG2 157 aa9.41□□□□□ -0.9
COL8A1-202ENST00000273342 LST1O00453 97 aa9.41□□□□□ -0.9
COL8A1-202ENST00000273342 CCL19Q99731 98 aa9.41□□□□□ -0.9
COL8A1-202ENST00000273342 DOPEY1Q5JWR5 2465 aa9.41□□□□□ -0.9
COL8A1-202ENST00000273342 COX6A2Q02221 97 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms