RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 DEFB104AQ8WTQ1 72 aa16.48■□□□□ 0.23
HOXD9-201ENST00000249499 WFDC10AQ9H1F0 79 aa16.48■□□□□ 0.23
HOXD9-201ENST00000249499 TRAV4A0A0B4J268 109 aa16.47■□□□□ 0.23
HOXD9-201ENST00000249499 CIDEAO60543 219 aa16.47■□□□□ 0.23
HOXD9-201ENST00000249499 HERVK_113P61574 105 aa16.47■□□□□ 0.23
HOXD9-201ENST00000249499 NFE4Q86UQ8 179 aa16.47■□□□□ 0.23
HOXD9-201ENST00000249499 CHAC1Q9BUX1 264 aa16.47■□□□□ 0.23
HOXD9-201ENST00000249499 TRAV8-6A0A0B4J262 113 aa16.46■□□□□ 0.23
HOXD9-201ENST00000249499 TRBV10-1A0A0K0K1A3 114 aa16.46■□□□□ 0.23
HOXD9-201ENST00000249499 C11orf86A6NJI1 115 aa16.46■□□□□ 0.23
HOXD9-201ENST00000249499 TTTY13Q9BZ97 58 aa16.46■□□□□ 0.23
HOXD9-201ENST00000249499 RPL35AP18077 110 aaKnown RBP16.46■□□□□ 0.22
HOXD9-201ENST00000249499 TAL2Q16559 108 aa16.46■□□□□ 0.22
HOXD9-201ENST00000249499 PRIMA1Q86XR5 153 aa16.46■□□□□ 0.22
HOXD9-201ENST00000249499 C9orf66Q5T8R8 295 aa16.45■□□□□ 0.22
HOXD9-201ENST00000249499 IGLV4-3A0A075B6K6 122 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 MYMXA0A1B0GTQ4 84 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 MAPKAPK5-AS1Q8N8E1 139 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 ATRQ13535 2644 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 Q6ZVH6 145 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 OVOL2Q9BRP0 275 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 PRADC1Q9BSG0 188 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 SPANXA1Q9NS26 97 aa16.44■□□□□ 0.22
HOXD9-201ENST00000249499 RRN3P1Q2M238 152 aa16.43■□□□□ 0.22
HOXD9-201ENST00000249499 PLAC8L1A1L4L8 177 aa16.42■□□□□ 0.22
HOXD9-201ENST00000249499 COTL1Q14019 142 aa16.42■□□□□ 0.22
HOXD9-201ENST00000249499 Q6ZTI0 123 aa16.42■□□□□ 0.22
HOXD9-201ENST00000249499 CHCHD7Q9BUK0 85 aa16.42■□□□□ 0.22
HOXD9-201ENST00000249499 VCX2Q9H322 139 aa16.42■□□□□ 0.22
HOXD9-201ENST00000249499 FBN1P35555 2871 aaKnown RBP16.42■□□□□ 0.22
HOXD9-201ENST00000249499 AMELXQ99217 191 aa16.42■□□□□ 0.22
HOXD9-201ENST00000249499 H3BRM9 83 aa16.41■□□□□ 0.22
HOXD9-201ENST00000249499 UBE2V1Q13404 147 aa16.41■□□□□ 0.22
HOXD9-201ENST00000249499 ZNF479Q96JC4 524 aa16.41■□□□□ 0.22
HOXD9-201ENST00000249499 K7EQD1 137 aa16.4■□□□□ 0.22
HOXD9-201ENST00000249499 ZNRF2Q8NHG8 242 aa16.4■□□□□ 0.22
HOXD9-201ENST00000249499 CITED1Q99966 193 aa16.4■□□□□ 0.22
HOXD9-201ENST00000249499 TM2D2Q9BX73 214 aa16.4■□□□□ 0.22
HOXD9-201ENST00000249499 NOP10Q9NPE3 64 aaKnown RBP16.4■□□□□ 0.22
HOXD9-201ENST00000249499 Q9UF83 564 aa16.4■□□□□ 0.22
HOXD9-201ENST00000249499 TRBV7-3A0A075B6L6 115 aa16.39■□□□□ 0.22
HOXD9-201ENST00000249499 RPL36AP83881 106 aaKnown RBP16.39■□□□□ 0.21
HOXD9-201ENST00000249499 VAMP3Q15836 100 aa16.39■□□□□ 0.21
HOXD9-201ENST00000249499 RPL36ALQ969Q0 106 aaKnown RBP16.39■□□□□ 0.21
HOXD9-201ENST00000249499 PTTG1IPP53801 180 aa16.38■□□□□ 0.21
HOXD9-201ENST00000249499 OPRPNQ99935 248 aaPredicted RBP16.38■□□□□ 0.21
HOXD9-201ENST00000249499 UBE2D4Q9Y2X8 147 aa16.37■□□□□ 0.21
HOXD9-201ENST00000249499 GCSHP23434 173 aa16.37■□□□□ 0.21
HOXD9-201ENST00000249499 TMEM170BQ5T4T1 132 aa16.37■□□□□ 0.21
HOXD9-201ENST00000249499 DAZ4Q86SG3 579 aaKnown RBP16.37■□□□□ 0.21
HOXD9-201ENST00000249499 CEND1Q8N111 149 aa16.37■□□□□ 0.21
HOXD9-201ENST00000249499 TIMM21Q9BVV7 248 aa16.37■□□□□ 0.21
HOXD9-201ENST00000249499 DAZ3Q9NR90 486 aaKnown RBP16.37■□□□□ 0.21
HOXD9-201ENST00000249499 EMP1P54849 157 aa16.36■□□□□ 0.21
HOXD9-201ENST00000249499 FAM104AQ969W3 186 aa16.35■□□□□ 0.21
HOXD9-201ENST00000249499 ZNF815PA8K554 130 aa16.35■□□□□ 0.21
HOXD9-201ENST00000249499 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.35■□□□□ 0.21
HOXD9-201ENST00000249499 MRPS36P82909 103 aaKnown RBP16.34■□□□□ 0.21
HOXD9-201ENST00000249499 PHLDA1Q8WV24 401 aaPredicted RBP16.34■□□□□ 0.21
HOXD9-201ENST00000249499 C9orf118A6NHY6 69 aa16.33■□□□□ 0.21
HOXD9-201ENST00000249499 TRGV2A0A075B6R0 118 aa16.33■□□□□ 0.2
HOXD9-201ENST00000249499 TRBV6-4A0A1B0GX49 114 aa16.33■□□□□ 0.2
HOXD9-201ENST00000249499 TMEM223A0PJW6 202 aa16.33■□□□□ 0.2
HOXD9-201ENST00000249499 SLC25A29Q8N8R3 303 aa16.33■□□□□ 0.2
HOXD9-201ENST00000249499 CCL25O15444 150 aa16.32■□□□□ 0.2
HOXD9-201ENST00000249499 SMIM13P0DJ93 91 aa16.32■□□□□ 0.2
HOXD9-201ENST00000249499 ZNF22P17026 224 aaPredicted RBP16.32■□□□□ 0.2
HOXD9-201ENST00000249499 FXYD2P54710 66 aa16.32■□□□□ 0.2
HOXD9-201ENST00000249499 UBE2D3P61077 147 aa16.32■□□□□ 0.2
HOXD9-201ENST00000249499 UBE2D2P62837 147 aa16.32■□□□□ 0.2
HOXD9-201ENST00000249499 IGHV3-38A0A0C4DH36 116 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 SMIM9A6NGZ8 99 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 SMAGPQ0VAQ4 97 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 HIST1H4GQ99525 98 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 COL6A5A8TX70 2615 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 GAGE12BA1L429 117 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 LEPROTO15243 131 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 GAGE7O76087 117 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 GAGE12FP0CL80 117 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 GAGE12GP0CL81 117 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 GAGE12IP0CL82 117 aa16.31■□□□□ 0.2
HOXD9-201ENST00000249499 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.3■□□□□ 0.2
HOXD9-201ENST00000249499 A0A0J9YXV3 536 aa16.3■□□□□ 0.2
HOXD9-201ENST00000249499 IGKV2-29A2NJV5 120 aaPredicted RBP16.3■□□□□ 0.2
HOXD9-201ENST00000249499 KIR2DL5BQ8NHK3 375 aa16.3■□□□□ 0.2
HOXD9-201ENST00000249499 GTSF1LQ9H1H1 148 aa16.29■□□□□ 0.2
HOXD9-201ENST00000249499 CSDC2Q9Y534 153 aaKnown RBP16.29■□□□□ 0.2
HOXD9-201ENST00000249499 TINCRA0A1B0GVN0 87 aa16.29■□□□□ 0.2
HOXD9-201ENST00000249499 J3QQQ9 107 aa16.29■□□□□ 0.2
HOXD9-201ENST00000249499 AMMECR1LQ6DCA0 310 aa16.29■□□□□ 0.2
HOXD9-201ENST00000249499 SCGB1D4Q6XE38 83 aa16.29■□□□□ 0.2
HOXD9-201ENST00000249499 PLEKHB2Q96CS7 222 aa16.29■□□□□ 0.2
HOXD9-201ENST00000249499 LINC00612Q8N6U2 182 aa16.28■□□□□ 0.2
HOXD9-201ENST00000249499 WFDC9Q8NEX5 89 aa16.28■□□□□ 0.2
HOXD9-201ENST00000249499 LGALS3P17931 250 aaKnown RBP16.27■□□□□ 0.2
HOXD9-201ENST00000249499 CEMP1Q6PRD7 247 aaPredicted RBP16.27■□□□□ 0.2
HOXD9-201ENST00000249499 WIPF1O43516 503 aa16.27■□□□□ 0.19
HOXD9-201ENST00000249499 TSPEAR-AS2P59090 65 aa16.25■□□□□ 0.19
HOXD9-201ENST00000249499 Q6ZUT4 128 aa16.25■□□□□ 0.19
HOXD9-201ENST00000249499 SPATA3Q8NHX4 192 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms