RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 A0A1B0GUT8 65 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 TRGC1P0CF51 173 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 SMIM17P0DL12 118 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 EVI2AP22794 236 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 BORCS7Q96B45 105 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 ANAPC16Q96DE5 110 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 TNFRSF18Q9Y5U5 241 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 C16orf90A8MZG2 172 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 SLC7A5P1Q8MH63 180 aa13.03□□□□□ -0.32
CLN3-260ENST00000637578 LINC00694P0DN24 101 aa13.02□□□□□ -0.33
CLN3-260ENST00000637578 ZNF56Q15929 161 aa13.02□□□□□ -0.33
CLN3-260ENST00000637578 SPATA12Q7Z6I5 190 aa13.02□□□□□ -0.33
CLN3-260ENST00000637578 NFE4Q86UQ8 179 aa13.02□□□□□ -0.33
CLN3-260ENST00000637578 RYR1P21817 5038 aa13.02□□□□□ -0.33
CLN3-260ENST00000637578 GTSF1LQ9H1H1 148 aa13.01□□□□□ -0.33
CLN3-260ENST00000637578 LRP1BQ9NZR2 4599 aa13□□□□□ -0.33
CLN3-260ENST00000637578 IGHV3-38A0A0C4DH36 116 aa13□□□□□ -0.33
CLN3-260ENST00000637578 MGPP08493 103 aa13□□□□□ -0.33
CLN3-260ENST00000637578 KRTAP10-2P60368 255 aa13□□□□□ -0.33
CLN3-260ENST00000637578 RAB4BP61018 213 aa13□□□□□ -0.33
CLN3-260ENST00000637578 LINC01556Q5JQF7 62 aa13□□□□□ -0.33
CLN3-260ENST00000637578 ATP6V0E2Q8NHE4 81 aa13□□□□□ -0.33
CLN3-260ENST00000637578 Q9UF83 564 aa13□□□□□ -0.33
CLN3-260ENST00000637578 F5H697 171 aa12.99□□□□□ -0.33
CLN3-260ENST00000637578 LELP1Q5T871 98 aa12.99□□□□□ -0.33
CLN3-260ENST00000637578 C10orf126Q8N4M7 172 aa12.99□□□□□ -0.33
CLN3-260ENST00000637578 DPH3P1Q9H4G8 78 aa12.99□□□□□ -0.33
CLN3-260ENST00000637578 RIGQ13278 110 aa12.98□□□□□ -0.33
CLN3-260ENST00000637578 TRAV8-6A0A0B4J262 113 aa12.98□□□□□ -0.33
CLN3-260ENST00000637578 APOC3P02656 99 aa12.98□□□□□ -0.33
CLN3-260ENST00000637578 CLRN3Q8NCR9 226 aa12.98□□□□□ -0.33
CLN3-260ENST00000637578 PCLOQ9Y6V0 5065 aa12.97□□□□□ -0.33
CLN3-260ENST00000637578 SMIM15Q7Z3B0 74 aa12.97□□□□□ -0.33
CLN3-260ENST00000637578 CTDSP1Q9GZU7 261 aa12.97□□□□□ -0.33
CLN3-260ENST00000637578 C7orf77A4D0Y5 90 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 GAGE12JA6NER3 117 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 CDK2AP2O75956 126 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 GAGE1Q13065 139 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 GAGE4Q13068 117 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 GAGE5Q13069 117 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 NDUFA5Q16718 116 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 GAGE13Q4V321 117 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 OR10J3Q5JRS4 329 aa12.96□□□□□ -0.33
CLN3-260ENST00000637578 RHEBQ15382 184 aa12.95□□□□□ -0.34
CLN3-260ENST00000637578 SUMO4Q6EEV6 95 aa12.95□□□□□ -0.34
CLN3-260ENST00000637578 MRPL54Q6P161 138 aaKnown RBP12.95□□□□□ -0.34
CLN3-260ENST00000637578 HSPG2P98160 4391 aa12.95□□□□□ -0.34
CLN3-260ENST00000637578 TRBV10-1A0A0K0K1A3 114 aa12.94□□□□□ -0.34
CLN3-260ENST00000637578 IBA57-AS1B1ANH7 110 aa12.94□□□□□ -0.34
CLN3-260ENST00000637578 TMEM191AQ9H0A3 160 aa12.94□□□□□ -0.34
CLN3-260ENST00000637578 M0QY20 66 aa12.94□□□□□ -0.34
CLN3-260ENST00000637578 CAMPP49913 170 aa12.94□□□□□ -0.34
CLN3-260ENST00000637578 SVBPQ8N300 66 aa12.94□□□□□ -0.34
CLN3-260ENST00000637578 RPS10P5Q9NQ39 176 aa12.94□□□□□ -0.34
CLN3-260ENST00000637578 A0A087WTM6 91 aa12.93□□□□□ -0.34
CLN3-260ENST00000637578 A0A087WWC5 75 aa12.93□□□□□ -0.34
CLN3-260ENST00000637578 A0A1B0GXF2 115 aa12.93□□□□□ -0.34
CLN3-260ENST00000637578 HBBP68871 147 aa12.93□□□□□ -0.34
CLN3-260ENST00000637578 NEXN-AS1Q8NBZ9 246 aa12.93□□□□□ -0.34
CLN3-260ENST00000637578 KRTAP17-1Q9BYP8 105 aa12.93□□□□□ -0.34
CLN3-260ENST00000637578 PGPEP1Q9NXJ5 209 aa12.93□□□□□ -0.34
CLN3-260ENST00000637578 DNAH5Q8TE73 4624 aa12.92□□□□□ -0.34
CLN3-260ENST00000637578 TRAV26-2A0A0B4J265 109 aa12.92□□□□□ -0.34
CLN3-260ENST00000637578 A0A1B0GW15 77 aa12.92□□□□□ -0.34
CLN3-260ENST00000637578 IMMP2LQ96T52 175 aa12.92□□□□□ -0.34
CLN3-260ENST00000637578 TMEM242Q9NWH2 141 aa12.92□□□□□ -0.34
CLN3-260ENST00000637578 H7C1H1 209 aa12.91□□□□□ -0.34
CLN3-260ENST00000637578 SNAPINO95295 136 aa12.91□□□□□ -0.34
CLN3-260ENST00000637578 RPL36AP83881 106 aaKnown RBP12.91□□□□□ -0.34
CLN3-260ENST00000637578 ATP5L2Q7Z4Y8 100 aa12.91□□□□□ -0.34
CLN3-260ENST00000637578 AMN1Q8IY45 258 aa12.91□□□□□ -0.34
CLN3-260ENST00000637578 RPL36ALQ969Q0 106 aaKnown RBP12.91□□□□□ -0.34
CLN3-260ENST00000637578 RNF185Q96GF1 192 aa12.91□□□□□ -0.34
CLN3-260ENST00000637578 TRBV7-3A0A075B6L6 115 aa12.9□□□□□ -0.34
CLN3-260ENST00000637578 EREGO14944 169 aa12.9□□□□□ -0.34
CLN3-260ENST00000637578 GATD1Q8NB37 220 aa12.9□□□□□ -0.34
CLN3-260ENST00000637578 IGHV3-30P01768 117 aa12.9□□□□□ -0.35
CLN3-260ENST00000637578 IGHV3-33P01772 117 aa12.9□□□□□ -0.35
CLN3-260ENST00000637578 IGHV3-30-3P0DP02 117 aa12.9□□□□□ -0.35
CLN3-260ENST00000637578 IGHV3-30-5P0DP03 117 aa12.9□□□□□ -0.35
CLN3-260ENST00000637578 KCNIP4Q6PIL6 250 aa12.9□□□□□ -0.35
CLN3-260ENST00000637578 RASL11AQ6T310 242 aa12.9□□□□□ -0.35
CLN3-260ENST00000637578 BTF3L4Q96K17 158 aa12.9□□□□□ -0.35
CLN3-260ENST00000637578 S100A8P05109 93 aa12.89□□□□□ -0.35
CLN3-260ENST00000637578 RAB4AP20338 218 aa12.89□□□□□ -0.35
CLN3-260ENST00000637578 UBE2D3P61077 147 aa12.89□□□□□ -0.35
CLN3-260ENST00000637578 UBE2D2P62837 147 aa12.89□□□□□ -0.35
CLN3-260ENST00000637578 LAGE3Q14657 143 aa12.89□□□□□ -0.35
CLN3-260ENST00000637578 CDPF1Q6NVV7 123 aa12.89□□□□□ -0.35
CLN3-260ENST00000637578 URGCP-MRPS24S4R325 110 aa12.89□□□□□ -0.35
CLN3-260ENST00000637578 APOBP04114 4563 aaKnown RBP12.88□□□□□ -0.35
CLN3-260ENST00000637578 LRCOL1A6NCL2 159 aa12.87□□□□□ -0.35
CLN3-260ENST00000637578 S100PP25815 95 aa12.87□□□□□ -0.35
CLN3-260ENST00000637578 FAM104BQ5XKR9 115 aa12.87□□□□□ -0.35
CLN3-260ENST00000637578 Q8N3U1 123 aa12.87□□□□□ -0.35
CLN3-260ENST00000637578 NIT2Q9NQR4 276 aa12.87□□□□□ -0.35
CLN3-260ENST00000637578 GAS8-AS1O95177 125 aa12.86□□□□□ -0.35
CLN3-260ENST00000637578 ATRAIDQ6UW56 229 aa12.86□□□□□ -0.35
CLN3-260ENST00000637578 RPL39LQ96EH5 51 aaKnown RBP12.86□□□□□ -0.35
CLN3-260ENST00000637578 DNAJC30Q96LL9 226 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms