RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 KIF25-AS1Q9Y6Z4 181 aa10.19□□□□□ -0.78
SHKBP1-228ENST00000602239 USP17L23D6RBM5 183 aa10.18□□□□□ -0.78
SHKBP1-228ENST00000602239 CRPP02741 224 aa10.18□□□□□ -0.78
SHKBP1-228ENST00000602239 PRSS1P07477 247 aa10.18□□□□□ -0.78
SHKBP1-228ENST00000602239 OR5AL1P0C617 328 aa10.18□□□□□ -0.78
SHKBP1-228ENST00000602239 C14orf177Q52M58 125 aa10.18□□□□□ -0.78
SHKBP1-228ENST00000602239 SPANXN1Q5VSR9 72 aa10.18□□□□□ -0.78
SHKBP1-228ENST00000602239 IGLV2-8P01709 118 aa10.17□□□□□ -0.78
SHKBP1-228ENST00000602239 HLA-DQA1P01909 254 aa10.17□□□□□ -0.78
SHKBP1-228ENST00000602239 KRTAP26-1Q6PEX3 210 aa10.17□□□□□ -0.78
SHKBP1-228ENST00000602239 CLPSL2Q6UWE3 100 aa10.17□□□□□ -0.78
SHKBP1-228ENST00000602239 VAX2Q9UIW0 290 aa10.17□□□□□ -0.78
SHKBP1-228ENST00000602239 RBX1P62877 108 aa10.16□□□□□ -0.78
SHKBP1-228ENST00000602239 GAGE6Q13070 117 aa10.16□□□□□ -0.78
SHKBP1-228ENST00000602239 DERL1Q9BUN8 251 aa10.16□□□□□ -0.78
SHKBP1-228ENST00000602239 UMAD1C9J7I0 102 aa10.15□□□□□ -0.78
SHKBP1-228ENST00000602239 GZMBP10144 247 aa10.15□□□□□ -0.78
SHKBP1-228ENST00000602239 CCL20P78556 96 aa10.15□□□□□ -0.78
SHKBP1-228ENST00000602239 MIAQ16674 131 aa10.15□□□□□ -0.78
SHKBP1-228ENST00000602239 RGS21Q2M5E4 152 aa10.15□□□□□ -0.78
SHKBP1-228ENST00000602239 LINC00269Q8N2A0 174 aa10.15□□□□□ -0.78
SHKBP1-228ENST00000602239 PRR34Q9NV39 138 aa10.15□□□□□ -0.78
SHKBP1-228ENST00000602239 PANO1I0J062 215 aa10.14□□□□□ -0.79
SHKBP1-228ENST00000602239 PFDN1O60925 122 aa10.14□□□□□ -0.79
SHKBP1-228ENST00000602239 OXTP01178 125 aa10.14□□□□□ -0.79
SHKBP1-228ENST00000602239 H2AFB1P0C5Y9 115 aa10.14□□□□□ -0.79
SHKBP1-228ENST00000602239 RPL35P42766 123 aaKnown RBP10.14□□□□□ -0.79
SHKBP1-228ENST00000602239 ZNF345Q14585 488 aa10.14□□□□□ -0.79
SHKBP1-228ENST00000602239 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.14□□□□□ -0.79
SHKBP1-228ENST00000602239 SMIM17P0DL12 118 aa10.13□□□□□ -0.79
SHKBP1-228ENST00000602239 HNRNPA3P51991 378 aaKnown RBP10.13□□□□□ -0.79
SHKBP1-228ENST00000602239 DGAT2L7PQ6IED9 249 aa10.13□□□□□ -0.79
SHKBP1-228ENST00000602239 C9orf163Q8N9P6 203 aa10.13□□□□□ -0.79
SHKBP1-228ENST00000602239 DAZAP1Q96EP5 407 aaKnown RBP10.13□□□□□ -0.79
SHKBP1-228ENST00000602239 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.13□□□□□ -0.79
SHKBP1-228ENST00000602239 TRBV25-1A0A075B6N4 114 aa10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 HMSDA8MTL9 139 aa10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 M0QY20 66 aa10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 RPL37AP61513 92 aaKnown RBP10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 PKIAP61925 76 aa10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 TMEM97Q5BJF2 176 aa10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 SERTAD4-AS1Q5TG53 156 aa10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 TPPP3Q9BW30 176 aa10.12□□□□□ -0.79
SHKBP1-228ENST00000602239 FAT3Q8TDW7 4589 aa10.11□□□□□ -0.79
SHKBP1-228ENST00000602239 IGLV10-54A0A075B6I4 117 aa10.11□□□□□ -0.79
SHKBP1-228ENST00000602239 A0A0D9SG52 128 aa10.11□□□□□ -0.79
SHKBP1-228ENST00000602239 BCL2L11O43521 198 aa10.11□□□□□ -0.79
SHKBP1-228ENST00000602239 IQCJQ1A5X6 159 aa10.11□□□□□ -0.79
SHKBP1-228ENST00000602239 SDIM1Q6ZPB5 146 aa10.11□□□□□ -0.79
SHKBP1-228ENST00000602239 AP1S3Q96PC3 154 aa10.11□□□□□ -0.79
SHKBP1-228ENST00000602239 MGPP08493 103 aa10.1□□□□□ -0.79
SHKBP1-228ENST00000602239 IGLC6P0CF74 106 aa10.1□□□□□ -0.79
SHKBP1-228ENST00000602239 C20orf203Q8NBC4 194 aa10.1□□□□□ -0.79
SHKBP1-228ENST00000602239 GNG13Q9P2W3 67 aa10.1□□□□□ -0.79
SHKBP1-228ENST00000602239 IGHV1-24A0A0C4DH33 117 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 KANTRA0A1W2PQU2 76 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 RAB19A4D1S5 217 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 REG3AQ06141 175 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 CENPWQ5EE01 88 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 SUMO4Q6EEV6 95 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 FER1L6-AS1Q8NA97 138 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 OR2D3Q8NGH3 330 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 C11orf52Q96A22 123 aa10.09□□□□□ -0.79
SHKBP1-228ENST00000602239 IGLV4-60A0A075B6I1 120 aa10.08□□□□□ -0.8
SHKBP1-228ENST00000602239 C19orf71A6NCJ1 209 aa10.08□□□□□ -0.8
SHKBP1-228ENST00000602239 NKX2-5P52952 324 aaPredicted RBP10.08□□□□□ -0.8
SHKBP1-228ENST00000602239 GFRA4Q9GZZ7 299 aa10.08□□□□□ -0.8
SHKBP1-228ENST00000602239 SLPIP03973 132 aa10.07□□□□□ -0.8
SHKBP1-228ENST00000602239 RAB5CP51148 216 aa10.07□□□□□ -0.8
SHKBP1-228ENST00000602239 MANBALQ9NQG1 85 aa10.07□□□□□ -0.8
SHKBP1-228ENST00000602239 LYZL1Q6UWQ5 148 aa10.06□□□□□ -0.8
SHKBP1-228ENST00000602239 CLRN3Q8NCR9 226 aa10.06□□□□□ -0.8
SHKBP1-228ENST00000602239 HMCN2Q8NDA2 5059 aa10.06□□□□□ -0.8
SHKBP1-228ENST00000602239 TRAV1-1A0A0B4J248 108 aa10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 hDV102S1A0JD36 115 aa10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 H7C1H1 209 aa10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 RPS20P60866 119 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 CACNG7P62955 275 aa10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 EIF5AP63241 154 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 RASL11AQ6T310 242 aa10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 TMEM243Q9BU79 118 aa10.05□□□□□ -0.8
SHKBP1-228ENST00000602239 TRBV20OR9-2A0A075B6H5 130 aa10.04□□□□□ -0.8
SHKBP1-228ENST00000602239 A0A1B0GUV1 79 aa10.04□□□□□ -0.8
SHKBP1-228ENST00000602239 NTF3P20783 257 aa10.04□□□□□ -0.8
SHKBP1-228ENST00000602239 GNG4P50150 75 aa10.04□□□□□ -0.8
SHKBP1-228ENST00000602239 CNBPP62633 177 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-228ENST00000602239 NIT2Q9NQR4 276 aa10.04□□□□□ -0.8
SHKBP1-228ENST00000602239 TRAV8-4A0A0B4J246 113 aa10.03□□□□□ -0.8
SHKBP1-228ENST00000602239 F2Z2F3 143 aa10.03□□□□□ -0.8
SHKBP1-228ENST00000602239 P01737 135 aa10.03□□□□□ -0.8
SHKBP1-228ENST00000602239 CIRBPQ14011 172 aaKnown RBP10.03□□□□□ -0.8
SHKBP1-228ENST00000602239 PKHD1L1Q86WI1 4243 aa10.03□□□□□ -0.8
SHKBP1-228ENST00000602239 IFNA1P01562 189 aa10.02□□□□□ -0.81
SHKBP1-228ENST00000602239 CHTF8P0CG12 524 aa10.02□□□□□ -0.81
SHKBP1-228ENST00000602239 C9orf62Q8N4C0 152 aa10.02□□□□□ -0.81
SHKBP1-228ENST00000602239 PLA2G2DQ9UNK4 145 aa10.02□□□□□ -0.81
SHKBP1-228ENST00000602239 UBR4Q5T4S7 5183 aa10.01□□□□□ -0.81
SHKBP1-228ENST00000602239 XKRY2A2RUG3 117 aa10.01□□□□□ -0.81
SHKBP1-228ENST00000602239 MT1HL1P0DM35 61 aa10.01□□□□□ -0.81
SHKBP1-228ENST00000602239 MEF2BQ02080 365 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms