RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 AP1S3Q96PC3 154 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 CHCHD5Q9BSY4 110 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 GNG13Q9P2W3 67 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 TEX46H3BTG2 121 aa6.43□□□□□ -1.38
VRK3-216ENST00000599342 J3QL48 77 aa6.43□□□□□ -1.38
VRK3-216ENST00000599342 MPV17L2Q567V2 206 aa6.43□□□□□ -1.38
VRK3-216ENST00000599342 DAZAP1Q96EP5 407 aaKnown RBP6.43□□□□□ -1.38
VRK3-216ENST00000599342 TPPP3Q9BW30 176 aa6.43□□□□□ -1.38
VRK3-216ENST00000599342 SSBP4Q9BWG4 385 aaPredicted RBP6.43□□□□□ -1.38
VRK3-216ENST00000599342 HLA-DQA1P01909 254 aa6.42□□□□□ -1.38
VRK3-216ENST00000599342 MGPP08493 103 aa6.42□□□□□ -1.38
VRK3-216ENST00000599342 CENPWQ5EE01 88 aa6.42□□□□□ -1.38
VRK3-216ENST00000599342 ENHOQ6UWT2 76 aa6.42□□□□□ -1.38
VRK3-216ENST00000599342 SCXQ7RTU7 201 aa6.42□□□□□ -1.38
VRK3-216ENST00000599342 C11orf52Q96A22 123 aa6.42□□□□□ -1.38
VRK3-216ENST00000599342 DERL1Q9BUN8 251 aa6.42□□□□□ -1.38
VRK3-216ENST00000599342 DNAH8Q96JB1 4490 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 TRBV25-1A0A075B6N4 114 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 XKRY2A2RUG3 117 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 H7C1H1 209 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 RAB5CP51148 216 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 RPS20P60866 119 aaKnown RBP6.41□□□□□ -1.38
VRK3-216ENST00000599342 MIAQ16674 131 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 EIF5AL1Q6IS14 154 aaKnown RBP6.41□□□□□ -1.38
VRK3-216ENST00000599342 FER1L6-AS1Q8NA97 138 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 OR2D3Q8NGH3 330 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 DEFB104AQ8WTQ1 72 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 VPS13BQ7Z7G8 4022 aa6.41□□□□□ -1.38
VRK3-216ENST00000599342 IFNA1P01562 189 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 GNG4P50150 75 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 CACNG7P62955 275 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 CCL20P78556 96 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 CLPSL2Q6UWE3 100 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 SMIM12Q96EX1 92 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 CHAC1Q9BUX1 264 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 VAX2Q9UIW0 290 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 HERC1Q15751 4861 aa6.4□□□□□ -1.38
VRK3-216ENST00000599342 TRAV1-1A0A0B4J248 108 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 IGHV1-24A0A0C4DH33 117 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 USP17L23D6RBM5 183 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 PDE6DO43924 150 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 P01737 135 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 GZMBP10144 247 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 MEF2BQ02080 365 aaPredicted RBP6.39□□□□□ -1.39
VRK3-216ENST00000599342 GAGE6Q13070 117 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 NTM-AS1Q6ZSK4 140 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 BIN3Q9NQY0 253 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 KIF25-AS1Q9Y6Z4 181 aa6.39□□□□□ -1.39
VRK3-216ENST00000599342 F2Z2F3 143 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 M0QY20 66 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 IGLV2-8P01709 118 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 TRGC1P0CF51 173 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 IGLC6P0CF74 106 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 RBX1P62877 108 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 IQCJQ1A5X6 159 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 SUMO4Q6EEV6 95 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 LINC00269Q8N2A0 174 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 CIRBP-AS1Q8TBR5 109 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 PRR34Q9NV39 138 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 MYCBP2O75592 4640 aa6.38□□□□□ -1.39
VRK3-216ENST00000599342 RAB19A4D1S5 217 aa6.37□□□□□ -1.39
VRK3-216ENST00000599342 C19orf71A6NCJ1 209 aa6.37□□□□□ -1.39
VRK3-216ENST00000599342 SULT1A2P50226 295 aa6.37□□□□□ -1.39
VRK3-216ENST00000599342 NKX2-5P52952 324 aaPredicted RBP6.37□□□□□ -1.39
VRK3-216ENST00000599342 MED9Q9NWA0 146 aa6.37□□□□□ -1.39
VRK3-216ENST00000599342 KRTAP29-1A8MX34 341 aaPredicted RBP6.36□□□□□ -1.39
VRK3-216ENST00000599342 UBE2L6O14933 153 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 PRSS1P07477 247 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 BCL2P10415 239 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 REG3AQ06141 175 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 DGAT2L7PQ6IED9 249 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 RASL11AQ6T310 242 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 LYZL1Q6UWQ5 148 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 TMEM243Q9BU79 118 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 DPH3P1Q9H4G8 78 aa6.36□□□□□ -1.39
VRK3-216ENST00000599342 DMBT1Q9UGM3 2413 aaPredicted RBP6.36□□□□□ -1.39
VRK3-216ENST00000599342 FLG2Q5D862 2391 aaPredicted RBP6.36□□□□□ -1.39
VRK3-216ENST00000599342 IGLV10-54A0A075B6I4 117 aa6.35□□□□□ -1.39
VRK3-216ENST00000599342 NTF3P20783 257 aa6.35□□□□□ -1.39
VRK3-216ENST00000599342 TAGLN2P37802 199 aaKnown RBP6.35□□□□□ -1.39
VRK3-216ENST00000599342 SLC51BQ86UW2 128 aa6.35□□□□□ -1.39
VRK3-216ENST00000599342 CLRN3Q8NCR9 226 aa6.35□□□□□ -1.39
VRK3-216ENST00000599342 PGLYRP4Q96LB8 373 aa6.35□□□□□ -1.39
VRK3-216ENST00000599342 NIT2Q9NQR4 276 aa6.35□□□□□ -1.39
VRK3-216ENST00000599342 TRBV20OR9-2A0A075B6H5 130 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 TRAV8-4A0A0B4J246 113 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 CTRLP40313 264 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 COTL1Q14019 142 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 TWIST1Q15672 202 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 WDR73Q6P4I2 378 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 TCTE3Q8IZS6 198 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 C9orf62Q8N4C0 152 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 C9orf163Q8N9P6 203 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 C20orf203Q8NBC4 194 aa6.34□□□□□ -1.39
VRK3-216ENST00000599342 IGLV4-60A0A075B6I1 120 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 A0A1B0GUV1 79 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 hDV102S1A0JD36 115 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 AMTP48728 403 aa6.33□□□□□ -1.4
VRK3-216ENST00000599342 RPL37AP61513 92 aaKnown RBP6.33□□□□□ -1.4
VRK3-216ENST00000599342 KRTAP26-1Q6PEX3 210 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms