RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 HLA-DQA1P01909 254 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 NKX2-5P52952 324 aaPredicted RBP6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 MEF2BQ02080 365 aaPredicted RBP6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 TOR2AQ5JU69 321 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 SUMO4Q6EEV6 95 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 LYZL1Q6UWQ5 148 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 ALKAL2Q6UX46 152 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 NTM-AS1Q6ZSK4 140 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 C11orf52Q96A22 123 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 KIF25-AS1Q9Y6Z4 181 aa6.79□□□□□ -1.32
SHKBP1-210ENST00000595874 FAT1Q14517 4588 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 TRBV6-8A0A0A6YYG3 113 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 TRBV10-1A0A0K0K1A3 114 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 C19orf71A6NCJ1 209 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 TEX46H3BTG2 121 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 P01737 135 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 CRPP02741 224 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 OR5AL1P0C617 328 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 BCL2P10415 239 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 EIF5AL1Q6IS14 154 aaKnown RBP6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 ATRAIDQ6UW56 229 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 ENHOQ6UWT2 76 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 SLC51BQ86UW2 128 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 TCTE3Q8IZS6 198 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 NTN5Q8WTR8 489 aaPredicted RBP6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 AP1S3Q96PC3 154 aa6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 SSBP4Q9BWG4 385 aaPredicted RBP6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 RNASE7Q9H1E1 156 aaKnown RBP6.78□□□□□ -1.32
SHKBP1-210ENST00000595874 IGLV10-54A0A075B6I4 117 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 CXCL1P09341 107 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 IGLC6P0CF74 106 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 RAB5CP51148 216 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 Q6ZNX1 250 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 AKAP14Q86UN6 197 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 C9orf62Q8N4C0 152 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 NUDT10Q8NFP7 164 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 OR10G8Q8NGN5 311 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 RMI2Q96E14 147 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 NUDT11Q96G61 164 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 VAX2Q9UIW0 290 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 BOLA1Q9Y3E2 137 aa6.77□□□□□ -1.33
SHKBP1-210ENST00000595874 TRAV1-1A0A0B4J248 108 aa6.76□□□□□ -1.33
SHKBP1-210ENST00000595874 TRAV26-2A0A0B4J265 109 aa6.76□□□□□ -1.33
SHKBP1-210ENST00000595874 FAM229AH3BQW9 127 aa6.76□□□□□ -1.33
SHKBP1-210ENST00000595874 K7EN84 100 aa6.76□□□□□ -1.33
SHKBP1-210ENST00000595874 FOXA3P55318 350 aaPredicted RBP6.76□□□□□ -1.33
SHKBP1-210ENST00000595874 RPS20P60866 119 aaKnown RBP6.76□□□□□ -1.33
SHKBP1-210ENST00000595874 C1orf43Q9BWL3 253 aa6.76□□□□□ -1.33
SHKBP1-210ENST00000595874 IGKV3OR2-268A0A0C4DH90 116 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 PDE6DO43924 150 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 NTF3P20783 257 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 RBX1P62877 108 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 ELOBQ15370 118 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 TWIST1Q15672 202 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 LINC00269Q8N2A0 174 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 OCC1Q8TAD7 63 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 TMEM70Q9BUB7 260 aa6.75□□□□□ -1.33
SHKBP1-210ENST00000595874 TRBV25-1A0A075B6N4 114 aa6.74□□□□□ -1.33
SHKBP1-210ENST00000595874 A0A1B0GVG6 124 aa6.74□□□□□ -1.33
SHKBP1-210ENST00000595874 USP17L23D6RBM5 183 aa6.74□□□□□ -1.33
SHKBP1-210ENST00000595874 M0QY20 66 aa6.74□□□□□ -1.33
SHKBP1-210ENST00000595874 CACNG7P62955 275 aa6.74□□□□□ -1.33
SHKBP1-210ENST00000595874 LINC00528Q8N1L1 170 aa6.74□□□□□ -1.33
SHKBP1-210ENST00000595874 IGHV1-24A0A0C4DH33 117 aa6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 SCXQ7RTU7 201 aa6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 RPL39LQ96EH5 51 aaKnown RBP6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 PGLYRP4Q96LB8 373 aa6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 GFRA4Q9GZZ7 299 aa6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 DPH3P1Q9H4G8 78 aa6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 RPP21Q9H633 154 aaKnown RBP6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 COX11Q9Y6N1 276 aa6.73□□□□□ -1.33
SHKBP1-210ENST00000595874 IGLV4-60A0A075B6I1 120 aa6.72□□□□□ -1.33
SHKBP1-210ENST00000595874 XKRY2A2RUG3 117 aa6.72□□□□□ -1.33
SHKBP1-210ENST00000595874 GATCO43716 136 aaKnown RBP6.72□□□□□ -1.33
SHKBP1-210ENST00000595874 TRGC1P0CF51 173 aa6.72□□□□□ -1.33
SHKBP1-210ENST00000595874 Q0VG73 95 aa6.72□□□□□ -1.33
SHKBP1-210ENST00000595874 RASL11AQ6T310 242 aa6.72□□□□□ -1.33
SHKBP1-210ENST00000595874 CHCHD7Q9BUK0 85 aa6.72□□□□□ -1.33
SHKBP1-210ENST00000595874 H7C1H1 209 aa6.71□□□□□ -1.34
SHKBP1-210ENST00000595874 PRSS1P07477 247 aa6.71□□□□□ -1.34
SHKBP1-210ENST00000595874 AMTP48728 403 aa6.71□□□□□ -1.34
SHKBP1-210ENST00000595874 GATD1Q8NB37 220 aa6.71□□□□□ -1.34
SHKBP1-210ENST00000595874 C20orf203Q8NBC4 194 aa6.71□□□□□ -1.34
SHKBP1-210ENST00000595874 GTSF1Q8WW33 167 aa6.71□□□□□ -1.34
SHKBP1-210ENST00000595874 TMEM243Q9BU79 118 aa6.71□□□□□ -1.34
SHKBP1-210ENST00000595874 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 IGKV2-29A2NJV5 120 aaPredicted RBP6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 F2Z2F3 143 aa6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 UBE2L6O14933 153 aa6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 GAS8-AS1O95177 125 aa6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 BLOC1S1P78537 153 aa6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 REG3AQ06141 175 aa6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 EIF5A2Q9GZV4 153 aaKnown RBP6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 NIT2Q9NQR4 276 aa6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 BIN3Q9NQY0 253 aa6.7□□□□□ -1.34
SHKBP1-210ENST00000595874 CTRLP40313 264 aa6.69□□□□□ -1.34
SHKBP1-210ENST00000595874 IQCJQ1A5X6 159 aa6.69□□□□□ -1.34
SHKBP1-210ENST00000595874 TMEM97Q5BJF2 176 aa6.69□□□□□ -1.34
SHKBP1-210ENST00000595874 Q6ZSA8 131 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms