RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 PKHD1L1Q86WI1 4243 aa15.5■□□□□ 0.07
LSM4-202ENST00000593564 TMEM97Q5BJF2 176 aa15.49■□□□□ 0.07
LSM4-202ENST00000593564 SERTAD4-AS1Q5TG53 156 aa15.49■□□□□ 0.07
LSM4-202ENST00000593564 SPANXN1Q5VSR9 72 aa15.49■□□□□ 0.07
LSM4-202ENST00000593564 SFT2D1Q8WV19 159 aa15.49■□□□□ 0.07
LSM4-202ENST00000593564 VAX2Q9UIW0 290 aa15.49■□□□□ 0.07
LSM4-202ENST00000593564 PFDN1O60925 122 aa15.48■□□□□ 0.07
LSM4-202ENST00000593564 HLA-DQA1P01909 254 aa15.48■□□□□ 0.07
LSM4-202ENST00000593564 NTM-AS1Q6ZSK4 140 aa15.48■□□□□ 0.07
LSM4-202ENST00000593564 MUC21A0A0G2JKD1 596 aa15.47■□□□□ 0.07
LSM4-202ENST00000593564 MUC21A0A140T8X8 626 aa15.47■□□□□ 0.07
LSM4-202ENST00000593564 UMAD1C9J7I0 102 aa15.47■□□□□ 0.07
LSM4-202ENST00000593564 F5H697 171 aa15.47■□□□□ 0.07
LSM4-202ENST00000593564 FAM213BQ8TBF2 198 aa15.47■□□□□ 0.07
LSM4-202ENST00000593564 PRR34Q9NV39 138 aa15.47■□□□□ 0.07
LSM4-202ENST00000593564 ZNF345Q14585 488 aa15.46■□□□□ 0.07
LSM4-202ENST00000593564 DGAT2L7PQ6IED9 249 aa15.46■□□□□ 0.07
LSM4-202ENST00000593564 KCNRGQ8N5I3 272 aa15.46■□□□□ 0.07
LSM4-202ENST00000593564 KIF25-AS1Q9Y6Z4 181 aa15.46■□□□□ 0.07
LSM4-202ENST00000593564 A0A1B0GV50 99 aa15.45■□□□□ 0.06
LSM4-202ENST00000593564 PRSS1P07477 247 aa15.45■□□□□ 0.06
LSM4-202ENST00000593564 UBR4Q5T4S7 5183 aa15.44■□□□□ 0.06
LSM4-202ENST00000593564 SMLR1H3BR10 107 aa15.44■□□□□ 0.06
LSM4-202ENST00000593564 RPL37AP61513 92 aaKnown RBP15.44■□□□□ 0.06
LSM4-202ENST00000593564 RBX1P62877 108 aa15.44■□□□□ 0.06
LSM4-202ENST00000593564 AP1S3Q96PC3 154 aa15.44■□□□□ 0.06
LSM4-202ENST00000593564 DERL1Q9BUN8 251 aa15.44■□□□□ 0.06
LSM4-202ENST00000593564 TRBV25-1A0A075B6N4 114 aa15.43■□□□□ 0.06
LSM4-202ENST00000593564 SMIM17P0DL12 118 aa15.43■□□□□ 0.06
LSM4-202ENST00000593564 KRTAP26-1Q6PEX3 210 aa15.43■□□□□ 0.06
LSM4-202ENST00000593564 TMUB2Q71RG4 321 aa15.43■□□□□ 0.06
LSM4-202ENST00000593564 C9orf163Q8N9P6 203 aa15.43■□□□□ 0.06
LSM4-202ENST00000593564 SSTP61278 116 aa15.42■□□□□ 0.06
LSM4-202ENST00000593564 GAGE6Q13070 117 aa15.42■□□□□ 0.06
LSM4-202ENST00000593564 LINC00269Q8N2A0 174 aa15.42■□□□□ 0.06
LSM4-202ENST00000593564 IQCJQ1A5X6 159 aa15.41■□□□□ 0.06
LSM4-202ENST00000593564 RGS21Q2M5E4 152 aa15.41■□□□□ 0.06
LSM4-202ENST00000593564 CLPSL2Q6UWE3 100 aa15.41■□□□□ 0.06
LSM4-202ENST00000593564 RPL35P42766 123 aaKnown RBP15.4■□□□□ 0.06
LSM4-202ENST00000593564 H2AFB1P0C5Y9 115 aa15.39■□□□□ 0.05
LSM4-202ENST00000593564 IGHV1-24A0A0C4DH33 117 aa15.38■□□□□ 0.05
LSM4-202ENST00000593564 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.38■□□□□ 0.05
LSM4-202ENST00000593564 A0A0D9SG52 128 aa15.37■□□□□ 0.05
LSM4-202ENST00000593564 HMSDA8MTL9 139 aa15.37■□□□□ 0.05
LSM4-202ENST00000593564 M0QY20 66 aa15.37■□□□□ 0.05
LSM4-202ENST00000593564 BCL2L11O43521 198 aa15.37■□□□□ 0.05
LSM4-202ENST00000593564 CLRN3Q8NCR9 226 aa15.37■□□□□ 0.05
LSM4-202ENST00000593564 C11orf52Q96A22 123 aa15.37■□□□□ 0.05
LSM4-202ENST00000593564 H7C1H1 209 aa15.36■□□□□ 0.05
LSM4-202ENST00000593564 IGLC6P0CF74 106 aa15.36■□□□□ 0.05
LSM4-202ENST00000593564 SDIM1Q6ZPB5 146 aa15.36■□□□□ 0.05
LSM4-202ENST00000593564 DAZAP1Q96EP5 407 aaKnown RBP15.36■□□□□ 0.05
LSM4-202ENST00000593564 KANTRA0A1W2PQU2 76 aa15.35■□□□□ 0.05
LSM4-202ENST00000593564 MGPP08493 103 aa15.35■□□□□ 0.05
LSM4-202ENST00000593564 HNRNPA3P51991 378 aaKnown RBP15.35■□□□□ 0.05
LSM4-202ENST00000593564 REG3AQ06141 175 aa15.35■□□□□ 0.05
LSM4-202ENST00000593564 FER1L6-AS1Q8NA97 138 aa15.35■□□□□ 0.05
LSM4-202ENST00000593564 TPPP3Q9BW30 176 aa15.35■□□□□ 0.05
LSM4-202ENST00000593564 PANO1I0J062 215 aa15.34■□□□□ 0.05
LSM4-202ENST00000593564 GZMBP10144 247 aa15.34■□□□□ 0.05
LSM4-202ENST00000593564 RPS20P60866 119 aaKnown RBP15.34■□□□□ 0.05
LSM4-202ENST00000593564 EIF5AP63241 154 aaKnown RBP15.34■□□□□ 0.05
LSM4-202ENST00000593564 SUMO4Q6EEV6 95 aa15.34■□□□□ 0.05
LSM4-202ENST00000593564 MANBALQ9NQG1 85 aa15.34■□□□□ 0.05
LSM4-202ENST00000593564 CNBPP62633 177 aaKnown RBP15.33■□□□□ 0.04
LSM4-202ENST00000593564 CACNG7P62955 275 aa15.33■□□□□ 0.04
LSM4-202ENST00000593564 CENPWQ5EE01 88 aa15.33■□□□□ 0.04
LSM4-202ENST00000593564 C20orf203Q8NBC4 194 aa15.33■□□□□ 0.04
LSM4-202ENST00000593564 OR2D3Q8NGH3 330 aa15.33■□□□□ 0.04
LSM4-202ENST00000593564 IGLV10-54A0A075B6I4 117 aa15.32■□□□□ 0.04
LSM4-202ENST00000593564 TRAV8-4A0A0B4J246 113 aa15.32■□□□□ 0.04
LSM4-202ENST00000593564 P01737 135 aa15.32■□□□□ 0.04
LSM4-202ENST00000593564 CCL20P78556 96 aa15.32■□□□□ 0.04
LSM4-202ENST00000593564 GNG13Q9P2W3 67 aa15.32■□□□□ 0.04
LSM4-202ENST00000593564 PLA2G2DQ9UNK4 145 aa15.32■□□□□ 0.04
LSM4-202ENST00000593564 A0A1B0GUV1 79 aa15.31■□□□□ 0.04
LSM4-202ENST00000593564 C19orf71A6NCJ1 209 aa15.31■□□□□ 0.04
LSM4-202ENST00000593564 TMEM243Q9BU79 118 aa15.31■□□□□ 0.04
LSM4-202ENST00000593564 NKX2-5P52952 324 aaPredicted RBP15.3■□□□□ 0.04
LSM4-202ENST00000593564 CIRBPQ14011 172 aaKnown RBP15.3■□□□□ 0.04
LSM4-202ENST00000593564 TRAV1-1A0A0B4J248 108 aa15.29■□□□□ 0.04
LSM4-202ENST00000593564 hDV102S1A0JD36 115 aa15.29■□□□□ 0.04
LSM4-202ENST00000593564 RASL11AQ6T310 242 aa15.29■□□□□ 0.04
LSM4-202ENST00000593564 SMIM12Q96EX1 92 aa15.29■□□□□ 0.04
LSM4-202ENST00000593564 PGLYRP4Q96LB8 373 aa15.29■□□□□ 0.04
LSM4-202ENST00000593564 IGLV4-60A0A075B6I1 120 aa15.28■□□□□ 0.04
LSM4-202ENST00000593564 F2Z2F3 143 aa15.28■□□□□ 0.04
LSM4-202ENST00000593564 XKRY2A2RUG3 117 aa15.27■□□□□ 0.04
LSM4-202ENST00000593564 TRGC1P0CF51 173 aa15.27■□□□□ 0.04
LSM4-202ENST00000593564 GFRA4Q9GZZ7 299 aa15.27■□□□□ 0.04
LSM4-202ENST00000593564 GNG4P50150 75 aa15.26■□□□□ 0.03
LSM4-202ENST00000593564 NIT2Q9NQR4 276 aa15.26■□□□□ 0.03
LSM4-202ENST00000593564 AP5S1Q9NUS5 200 aa15.26■□□□□ 0.03
LSM4-202ENST00000593564 IGHV3-64A0A075B6Q5 118 aa15.25■□□□□ 0.03
LSM4-202ENST00000593564 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.25■□□□□ 0.03
LSM4-202ENST00000593564 RAB19A4D1S5 217 aa15.25■□□□□ 0.03
LSM4-202ENST00000593564 RAB5CP51148 216 aa15.25■□□□□ 0.03
LSM4-202ENST00000593564 LYZL1Q6UWQ5 148 aa15.25■□□□□ 0.03
LSM4-202ENST00000593564 DPH3P1Q9H4G8 78 aa15.25■□□□□ 0.03
LSM4-202ENST00000593564 SLPIP03973 132 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms