RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 SUMO4Q6EEV6 95 aa10.54□□□□□ -0.72
LIG3-215ENST00000592690 DAZ4Q86SG3 579 aaKnown RBP10.54□□□□□ -0.72
LIG3-215ENST00000592690 LINC01551Q86U37 167 aa10.54□□□□□ -0.72
LIG3-215ENST00000592690 CNFNQ9BYD5 112 aa10.54□□□□□ -0.72
LIG3-215ENST00000592690 DAZ3Q9NR90 486 aaKnown RBP10.54□□□□□ -0.72
LIG3-215ENST00000592690 A0A087WTM6 91 aa10.53□□□□□ -0.72
LIG3-215ENST00000592690 C9JQL5 133 aa10.53□□□□□ -0.72
LIG3-215ENST00000592690 M0QY20 66 aa10.53□□□□□ -0.72
LIG3-215ENST00000592690 SRSF3P84103 164 aaKnown RBP10.53□□□□□ -0.72
LIG3-215ENST00000592690 WDR73Q6P4I2 378 aa10.53□□□□□ -0.72
LIG3-215ENST00000592690 NIT1Q86X76 327 aa10.53□□□□□ -0.72
LIG3-215ENST00000592690 FUSP35637 526 aaKnown RBP eCLIP10.52□□□□□ -0.73
LIG3-215ENST00000592690 TWIST1Q15672 202 aa10.52□□□□□ -0.73
LIG3-215ENST00000592690 DPH3P1Q9H4G8 78 aa10.52□□□□□ -0.73
LIG3-215ENST00000592690 TRBV6-8A0A0A6YYG3 113 aa10.51□□□□□ -0.73
LIG3-215ENST00000592690 LAGE3Q14657 143 aa10.51□□□□□ -0.73
LIG3-215ENST00000592690 PCLOQ9Y6V0 5065 aa10.5□□□□□ -0.73
LIG3-215ENST00000592690 A8MWL6 223 aa10.5□□□□□ -0.73
LIG3-215ENST00000592690 H7C1H1 209 aa10.5□□□□□ -0.73
LIG3-215ENST00000592690 CT83Q5H943 113 aa10.5□□□□□ -0.73
LIG3-215ENST00000592690 NTM-AS1Q6ZSK4 140 aa10.5□□□□□ -0.73
LIG3-215ENST00000592690 PGLYRP4Q96LB8 373 aa10.5□□□□□ -0.73
LIG3-215ENST00000592690 URGCP-MRPS24S4R325 110 aa10.5□□□□□ -0.73
LIG3-215ENST00000592690 RYR1P21817 5038 aa10.49□□□□□ -0.73
LIG3-215ENST00000592690 EREGO14944 169 aa10.49□□□□□ -0.73
LIG3-215ENST00000592690 PSCAO43653 123 aa10.49□□□□□ -0.73
LIG3-215ENST00000592690 DNAJC30Q96LL9 226 aa10.49□□□□□ -0.73
LIG3-215ENST00000592690 OSTCQ9NRP0 149 aa10.49□□□□□ -0.73
LIG3-215ENST00000592690 LRP1BQ9NZR2 4599 aa10.49□□□□□ -0.73
LIG3-215ENST00000592690 DNAH5Q8TE73 4624 aa10.48□□□□□ -0.73
LIG3-215ENST00000592690 LRCOL1A6NCL2 159 aa10.48□□□□□ -0.73
LIG3-215ENST00000592690 FOXA3P55318 350 aaPredicted RBP10.48□□□□□ -0.73
LIG3-215ENST00000592690 RPL23P62829 140 aaKnown RBP10.48□□□□□ -0.73
LIG3-215ENST00000592690 FAM74A3Q4VXF1 159 aa10.48□□□□□ -0.73
LIG3-215ENST00000592690 RASL11AQ6T310 242 aa10.48□□□□□ -0.73
LIG3-215ENST00000592690 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.48□□□□□ -0.73
LIG3-215ENST00000592690 ISOC2Q96AB3 205 aa10.48□□□□□ -0.73
LIG3-215ENST00000592690 A0A087WX48 190 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 TRAV26-2A0A0B4J265 109 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 PEA15Q15121 130 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 TMEM241Q24JQ0 296 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 TSKUQ8WUA8 353 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 CHCHD7Q9BUK0 85 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 KLK12Q9UKR0 248 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 V9GYV3 84 aa10.47□□□□□ -0.73
LIG3-215ENST00000592690 TRAV8-3A0A0A6YYJ7 113 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 HIGD1CA8MV81 97 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 TMEM262E9PQX1 116 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 ADIRFQ15847 76 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 MPV17L2Q567V2 206 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 CHCHD5Q9BSY4 110 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 NIT2Q9NQR4 276 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 NAT8Q9UHE5 227 aa10.46□□□□□ -0.73
LIG3-215ENST00000592690 TMEM97Q5BJF2 176 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 KCNIP4Q6PIL6 250 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 C15orf54Q8N8G6 183 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 GATD1Q8NB37 220 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 DEFB104AQ8WTQ1 72 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 TM2D2Q9BX73 214 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 GFRA4Q9GZZ7 299 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 SMDT1Q9H4I9 107 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 PGPEP1Q9NXJ5 209 aa10.45□□□□□ -0.74
LIG3-215ENST00000592690 WFDC2Q14508 124 aa10.44□□□□□ -0.74
LIG3-215ENST00000592690 SMIM15Q7Z3B0 74 aa10.44□□□□□ -0.74
LIG3-215ENST00000592690 UBE2WQ96B02 151 aa10.44□□□□□ -0.74
LIG3-215ENST00000592690 HSPG2P98160 4391 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 TRBV25-1A0A075B6N4 114 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 A0A1B0GUT8 65 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 FAM231BA6NCW3 169 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 CDK2AP2O75956 126 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 GAGE6Q13070 117 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 ELOBQ15370 118 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 IQCJQ1A5X6 159 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 CDPF1Q6NVV7 123 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 ATRAIDQ6UW56 229 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 MAPKAPK5-AS1Q8N8E1 139 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 Q8N976 141 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 BORCS7Q96B45 105 aa10.43□□□□□ -0.74
LIG3-215ENST00000592690 RPL39LQ96EH5 51 aaKnown RBP10.43□□□□□ -0.74
LIG3-215ENST00000592690 IGKV2D-24A0A075B6R9 120 aa10.42□□□□□ -0.74
LIG3-215ENST00000592690 IGHV1-24A0A0C4DH33 117 aa10.42□□□□□ -0.74
LIG3-215ENST00000592690 NUP35Q8NFH5 326 aa10.42□□□□□ -0.74
LIG3-215ENST00000592690 APOBP04114 4563 aaKnown RBP10.42□□□□□ -0.74
LIG3-215ENST00000592690 ABCA13Q86UQ4 5058 aa10.42□□□□□ -0.74
LIG3-215ENST00000592690 ANGP03950 147 aaKnown RBP10.41□□□□□ -0.74
LIG3-215ENST00000592690 PKIAP61925 76 aa10.41□□□□□ -0.74
LIG3-215ENST00000592690 ENHOQ6UWT2 76 aa10.41□□□□□ -0.74
LIG3-215ENST00000592690 Q8N814 137 aa10.41□□□□□ -0.74
LIG3-215ENST00000592690 FRZBQ92765 325 aa10.41□□□□□ -0.74
LIG3-215ENST00000592690 RMI2Q96E14 147 aa10.41□□□□□ -0.74
LIG3-215ENST00000592690 LECT2O14960 151 aa10.4□□□□□ -0.74
LIG3-215ENST00000592690 GAS8-AS1O95177 125 aa10.4□□□□□ -0.74
LIG3-215ENST00000592690 RBX1P62877 108 aa10.4□□□□□ -0.74
LIG3-215ENST00000592690 TMEM191AQ9H0A3 160 aa10.4□□□□□ -0.74
LIG3-215ENST00000592690 CRPP02741 224 aa10.39□□□□□ -0.75
LIG3-215ENST00000592690 KRTAP10-1P60331 282 aa10.39□□□□□ -0.75
LIG3-215ENST00000592690 RAB14P61106 215 aa10.39□□□□□ -0.75
LIG3-215ENST00000592690 CLPSL2Q6UWE3 100 aa10.39□□□□□ -0.75
LIG3-215ENST00000592690 BAALCQ8WXS3 180 aa10.39□□□□□ -0.75
LIG3-215ENST00000592690 RNF185Q96GF1 192 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms