RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 FAM231BA6NCW3 169 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 H7C1H1 209 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 SCO1O75880 301 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 FOXA3P55318 350 aaPredicted RBP8.09□□□□□ -1.11
LIG3-213ENST00000590630 UBE2D3P61077 147 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 RPL23P62829 140 aaKnown RBP8.09□□□□□ -1.11
LIG3-213ENST00000590630 UBE2D2P62837 147 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 TWIST1Q15672 202 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 ADIRFQ15847 76 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 LINC01556Q5JQF7 62 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 NEXN-AS1Q8NBZ9 246 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 TSKUQ8WUA8 353 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 ISOC2Q96AB3 205 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 DPH3P1Q9H4G8 78 aa8.09□□□□□ -1.11
LIG3-213ENST00000590630 PKHD1P08F94 4074 aa8.08□□□□□ -1.12
LIG3-213ENST00000590630 MGPP08493 103 aa8.08□□□□□ -1.12
LIG3-213ENST00000590630 LINC00518Q8N0U6 118 aa8.08□□□□□ -1.12
LIG3-213ENST00000590630 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.08□□□□□ -1.12
LIG3-213ENST00000590630 BORCS7Q96B45 105 aa8.08□□□□□ -1.12
LIG3-213ENST00000590630 HIGD1CA8MV81 97 aa8.07□□□□□ -1.12
LIG3-213ENST00000590630 M0QY20 66 aa8.07□□□□□ -1.12
LIG3-213ENST00000590630 SMIM15Q7Z3B0 74 aa8.07□□□□□ -1.12
LIG3-213ENST00000590630 NFE4Q86UQ8 179 aa8.07□□□□□ -1.12
LIG3-213ENST00000590630 PGLYRP4Q96LB8 373 aa8.07□□□□□ -1.12
LIG3-213ENST00000590630 V9GYV3 84 aa8.07□□□□□ -1.12
LIG3-213ENST00000590630 PKD1P98161 4303 aa8.07□□□□□ -1.12
LIG3-213ENST00000590630 A0A1B0GVY2 172 aa8.06□□□□□ -1.12
LIG3-213ENST00000590630 SUMO4Q6EEV6 95 aa8.06□□□□□ -1.12
LIG3-213ENST00000590630 DAZ4Q86SG3 579 aaKnown RBP8.06□□□□□ -1.12
LIG3-213ENST00000590630 DNAJC30Q96LL9 226 aa8.06□□□□□ -1.12
LIG3-213ENST00000590630 DAZ3Q9NR90 486 aaKnown RBP8.06□□□□□ -1.12
LIG3-213ENST00000590630 A0A1B0GUT8 65 aa8.05□□□□□ -1.12
LIG3-213ENST00000590630 TNP2Q05952 138 aa8.05□□□□□ -1.12
LIG3-213ENST00000590630 TMEM97Q5BJF2 176 aa8.05□□□□□ -1.12
LIG3-213ENST00000590630 RASL11AQ6T310 242 aa8.05□□□□□ -1.12
LIG3-213ENST00000590630 Q6ZRN7 208 aaPredicted RBP8.05□□□□□ -1.12
LIG3-213ENST00000590630 CLRN3Q8NCR9 226 aa8.05□□□□□ -1.12
LIG3-213ENST00000590630 TNFRSF18Q9Y5U5 241 aa8.05□□□□□ -1.12
LIG3-213ENST00000590630 BIRC6Q9NR09 4857 aa8.04□□□□□ -1.12
LIG3-213ENST00000590630 TRBV6-8A0A0A6YYG3 113 aa8.04□□□□□ -1.12
LIG3-213ENST00000590630 LAGE3Q14657 143 aa8.04□□□□□ -1.12
LIG3-213ENST00000590630 FRZBQ92765 325 aa8.04□□□□□ -1.12
LIG3-213ENST00000590630 NAT8BQ9UHF3 227 aa8.04□□□□□ -1.12
LIG3-213ENST00000590630 URGCP-MRPS24S4R325 110 aa8.04□□□□□ -1.12
LIG3-213ENST00000590630 IBA57-AS1B1ANH7 110 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 IGHV3-30P01768 117 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 IGHV3-33P01772 117 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 IGHV3-30-3P0DP02 117 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 IGHV3-30-5P0DP03 117 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 NIT1Q86X76 327 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 NUP35Q8NFH5 326 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 CHCHD7Q9BUK0 85 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 NIT2Q9NQR4 276 aa8.03□□□□□ -1.12
LIG3-213ENST00000590630 SMIM27A0A1W2PRY6 76 aa8.02□□□□□ -1.13
LIG3-213ENST00000590630 PNRC1Q12796 327 aaPredicted RBP8.02□□□□□ -1.13
LIG3-213ENST00000590630 RIGQ13278 110 aa8.02□□□□□ -1.13
LIG3-213ENST00000590630 UQCC3Q6UW78 93 aa8.02□□□□□ -1.13
LIG3-213ENST00000590630 GATD1Q8NB37 220 aa8.02□□□□□ -1.13
LIG3-213ENST00000590630 A0A087WX48 190 aa8.01□□□□□ -1.13
LIG3-213ENST00000590630 TRAV26-2A0A0B4J265 109 aa8.01□□□□□ -1.13
LIG3-213ENST00000590630 PKIAP61925 76 aa8.01□□□□□ -1.13
LIG3-213ENST00000590630 KCNIP4Q6PIL6 250 aa8.01□□□□□ -1.13
LIG3-213ENST00000590630 Q8N3U1 123 aa8.01□□□□□ -1.13
LIG3-213ENST00000590630 TMEM191AQ9H0A3 160 aa8.01□□□□□ -1.13
LIG3-213ENST00000590630 TRBV25-1A0A075B6N4 114 aa8□□□□□ -1.13
LIG3-213ENST00000590630 TRAV8-3A0A0A6YYJ7 113 aa8□□□□□ -1.13
LIG3-213ENST00000590630 PPP1R2P9O14990 202 aa8□□□□□ -1.13
LIG3-213ENST00000590630 IQCJQ1A5X6 159 aa8□□□□□ -1.13
LIG3-213ENST00000590630 NTM-AS1Q6ZSK4 140 aa8□□□□□ -1.13
LIG3-213ENST00000590630 IGHV1-24A0A0C4DH33 117 aa7.99□□□□□ -1.13
LIG3-213ENST00000590630 A0A1B0GW15 77 aa7.99□□□□□ -1.13
LIG3-213ENST00000590630 ELOBQ15370 118 aa7.99□□□□□ -1.13
LIG3-213ENST00000590630 CHCHD5Q9BSY4 110 aa7.99□□□□□ -1.13
LIG3-213ENST00000590630 Q9HAA7 133 aa7.99□□□□□ -1.13
LIG3-213ENST00000590630 TMEM262E9PQX1 116 aa7.98□□□□□ -1.13
LIG3-213ENST00000590630 EREGO14944 169 aa7.98□□□□□ -1.13
LIG3-213ENST00000590630 PSCAO43653 123 aa7.98□□□□□ -1.13
LIG3-213ENST00000590630 MT-ND4LP03901 98 aa7.98□□□□□ -1.13
LIG3-213ENST00000590630 MRAP2Q96G30 205 aa7.98□□□□□ -1.13
LIG3-213ENST00000590630 S100A8P05109 93 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 RAB4AP20338 218 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 COTL1Q14019 142 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 MPV17L2Q567V2 206 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 AMN1Q8IY45 258 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 ANAPC16Q96DE5 110 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 RPL39LQ96EH5 51 aaKnown RBP7.97□□□□□ -1.13
LIG3-213ENST00000590630 RNF185Q96GF1 192 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 TM2D2Q9BX73 214 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 KLK12Q9UKR0 248 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 DNAH11Q96DT5 4516 aa7.97□□□□□ -1.13
LIG3-213ENST00000590630 TRBV6-5A0A0K0K1A5 114 aa7.96□□□□□ -1.14
LIG3-213ENST00000590630 TMEM218A2RU14 115 aa7.96□□□□□ -1.14
LIG3-213ENST00000590630 SDHAF1A6NFY7 115 aa7.96□□□□□ -1.14
LIG3-213ENST00000590630 HBBP68871 147 aa7.96□□□□□ -1.14
LIG3-213ENST00000590630 RMI2Q96E14 147 aa7.96□□□□□ -1.14
LIG3-213ENST00000590630 TMEM243Q9BU79 118 aa7.96□□□□□ -1.14
LIG3-213ENST00000590630 COX11Q9Y6N1 276 aa7.96□□□□□ -1.14
LIG3-213ENST00000590630 A0A087WTM6 91 aa7.95□□□□□ -1.14
LIG3-213ENST00000590630 F8W036 122 aa7.95□□□□□ -1.14
LIG3-213ENST00000590630 NCR2O95944 276 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms