RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ANGP03950 147 aaKnown RBP7.53□□□□□ -1.2
CLIP3-204ENST00000590559 OR5AL1P0C617 328 aa7.53□□□□□ -1.2
CLIP3-204ENST00000590559 MT1HL1P0DM35 61 aa7.53□□□□□ -1.2
CLIP3-204ENST00000590559 CIRBPQ14011 172 aaKnown RBP7.53□□□□□ -1.2
CLIP3-204ENST00000590559 SDIM1Q6ZPB5 146 aa7.53□□□□□ -1.2
CLIP3-204ENST00000590559 LRP2P98164 4655 aa7.53□□□□□ -1.2
CLIP3-204ENST00000590559 PAGE4O60829 102 aa7.52□□□□□ -1.21
CLIP3-204ENST00000590559 S100A9P06702 114 aaKnown RBP7.52□□□□□ -1.21
CLIP3-204ENST00000590559 AKR1C3P42330 323 aa7.52□□□□□ -1.21
CLIP3-204ENST00000590559 PKIAP61925 76 aa7.52□□□□□ -1.21
CLIP3-204ENST00000590559 ZNF56Q15929 161 aa7.52□□□□□ -1.21
CLIP3-204ENST00000590559 CST9LP1Q5W188 147 aa7.52□□□□□ -1.21
CLIP3-204ENST00000590559 MBD3L1Q8WWY6 194 aa7.52□□□□□ -1.21
CLIP3-204ENST00000590559 ZNF471Q9BX82 626 aaPredicted RBP7.52□□□□□ -1.21
CLIP3-204ENST00000590559 PLA2G2DQ9UNK4 145 aa7.52□□□□□ -1.21
CLIP3-204ENST00000590559 HLA-DQA1P01909 254 aa7.51□□□□□ -1.21
CLIP3-204ENST00000590559 RBX1P62877 108 aa7.51□□□□□ -1.21
CLIP3-204ENST00000590559 TMEM97Q5BJF2 176 aa7.51□□□□□ -1.21
CLIP3-204ENST00000590559 CHCHD5Q9BSY4 110 aa7.51□□□□□ -1.21
CLIP3-204ENST00000590559 SCO2A0A1W2PP80 73 aa7.5□□□□□ -1.21
CLIP3-204ENST00000590559 CNBPP62633 177 aaKnown RBP7.5□□□□□ -1.21
CLIP3-204ENST00000590559 IQCJQ1A5X6 159 aa7.5□□□□□ -1.21
CLIP3-204ENST00000590559 LINC00269Q8N2A0 174 aa7.5□□□□□ -1.21
CLIP3-204ENST00000590559 STOML3Q8TAV4 291 aa7.5□□□□□ -1.21
CLIP3-204ENST00000590559 MUC21A0A0G2JKD1 596 aa7.49□□□□□ -1.21
CLIP3-204ENST00000590559 MUC21A0A140T8X8 626 aa7.49□□□□□ -1.21
CLIP3-204ENST00000590559 ARPC5O15511 151 aa7.49□□□□□ -1.21
CLIP3-204ENST00000590559 BAGE2Q86Y30 109 aa7.49□□□□□ -1.21
CLIP3-204ENST00000590559 CLRN3Q8NCR9 226 aa7.49□□□□□ -1.21
CLIP3-204ENST00000590559 DERL1Q9BUN8 251 aa7.49□□□□□ -1.21
CLIP3-204ENST00000590559 M0QY20 66 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 SLPIP03973 132 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 IGLC6P0CF74 106 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 GAGE6Q13070 117 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 SPANXN1Q5VSR9 72 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 CLPSL2Q6UWE3 100 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 Q6ZRU5 148 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.48□□□□□ -1.21
CLIP3-204ENST00000590559 C20orf203Q8NBC4 194 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 BATF3Q9NR55 127 aa7.48□□□□□ -1.21
CLIP3-204ENST00000590559 TRBV25-1A0A075B6N4 114 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 A0A1B0GUV1 79 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 UMAD1C9J7I0 102 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 F5H697 171 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 REG3AQ06141 175 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 ZNF345Q14585 488 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 TMUB2Q71RG4 321 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 KCNRGQ8N5I3 272 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 SFT2D1Q8WV19 159 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 AP1S3Q96PC3 154 aa7.47□□□□□ -1.21
CLIP3-204ENST00000590559 TRAV8-4A0A0B4J246 113 aa7.46□□□□□ -1.22
CLIP3-204ENST00000590559 IGHV1-24A0A0C4DH33 117 aa7.46□□□□□ -1.22
CLIP3-204ENST00000590559 P01737 135 aa7.46□□□□□ -1.22
CLIP3-204ENST00000590559 GFRA4Q9GZZ7 299 aa7.46□□□□□ -1.22
CLIP3-204ENST00000590559 IGLV4-60A0A075B6I1 120 aa7.45□□□□□ -1.22
CLIP3-204ENST00000590559 IGLV10-54A0A075B6I4 117 aa7.45□□□□□ -1.22
CLIP3-204ENST00000590559 RPL35P42766 123 aaKnown RBP7.45□□□□□ -1.22
CLIP3-204ENST00000590559 SUMO4Q6EEV6 95 aa7.45□□□□□ -1.22
CLIP3-204ENST00000590559 FAM213BQ8TBF2 198 aa7.45□□□□□ -1.22
CLIP3-204ENST00000590559 C11orf52Q96A22 123 aa7.45□□□□□ -1.22
CLIP3-204ENST00000590559 RNF185Q96GF1 192 aa7.45□□□□□ -1.22
CLIP3-204ENST00000590559 A0A0D9SG52 128 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 C19orf71A6NCJ1 209 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 SMLR1H3BR10 107 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 PFDN1O60925 122 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 SMIM17P0DL12 118 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 GZMBP10144 247 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 SSTP61278 116 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 SPACA4Q8TDM5 124 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 PGLYRP4Q96LB8 373 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 RNF213Q63HN8 5207 aa7.44□□□□□ -1.22
CLIP3-204ENST00000590559 A0A087WYN8 130 aa7.43□□□□□ -1.22
CLIP3-204ENST00000590559 A0A1B0GV50 99 aa7.43□□□□□ -1.22
CLIP3-204ENST00000590559 HMSDA8MTL9 139 aa7.43□□□□□ -1.22
CLIP3-204ENST00000590559 IGHV3-64A0A075B6Q5 118 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 hDV102S1A0JD36 115 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 H7C1H1 209 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 H2AFB1P0C5Y9 115 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 CHTF8P0CG12 524 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 NKX2-5P52952 324 aaPredicted RBP7.42□□□□□ -1.22
CLIP3-204ENST00000590559 CCL20P78556 96 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 RASL11AQ6T310 242 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 C15orf56Q8N910 161 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 FER1L6-AS1Q8NA97 138 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 TMEM243Q9BU79 118 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 PLAC8Q9NZF1 115 aa7.42□□□□□ -1.22
CLIP3-204ENST00000590559 TRAV1-1A0A0B4J248 108 aa7.41□□□□□ -1.22
CLIP3-204ENST00000590559 MGPP08493 103 aa7.41□□□□□ -1.22
CLIP3-204ENST00000590559 CACNG7P62955 275 aa7.41□□□□□ -1.22
CLIP3-204ENST00000590559 SMIM12Q96EX1 92 aa7.41□□□□□ -1.22
CLIP3-204ENST00000590559 MANBALQ9NQG1 85 aa7.41□□□□□ -1.22
CLIP3-204ENST00000590559 NIT2Q9NQR4 276 aa7.41□□□□□ -1.22
CLIP3-204ENST00000590559 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.4□□□□□ -1.22
CLIP3-204ENST00000590559 F2Z2F3 143 aa7.4□□□□□ -1.22
CLIP3-204ENST00000590559 BCL2L11O43521 198 aa7.4□□□□□ -1.22
CLIP3-204ENST00000590559 RPS20P60866 119 aaKnown RBP7.4□□□□□ -1.22
CLIP3-204ENST00000590559 CENPWQ5EE01 88 aa7.4□□□□□ -1.22
CLIP3-204ENST00000590559 OR2D3Q8NGH3 330 aa7.4□□□□□ -1.22
CLIP3-204ENST00000590559 TRBV20OR9-2A0A075B6H5 130 aa7.39□□□□□ -1.23
CLIP3-204ENST00000590559 RAB19A4D1S5 217 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms