RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 OR10J3Q5JRS4 329 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 COMMD7Q86VX2 200 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 RPL36ALQ969Q0 106 aaKnown RBP9.22□□□□□ -0.93
CIITA-210ENST00000575513 MSRB1Q9NZV6 116 aa9.22□□□□□ -0.93
CIITA-210ENST00000575513 TNP2Q05952 138 aa9.21□□□□□ -0.94
CIITA-210ENST00000575513 HIGD1CA8MV81 97 aa9.2□□□□□ -0.94
CIITA-210ENST00000575513 UBE2D3P61077 147 aa9.2□□□□□ -0.94
CIITA-210ENST00000575513 SSTP61278 116 aa9.2□□□□□ -0.94
CIITA-210ENST00000575513 UBE2D2P62837 147 aa9.2□□□□□ -0.94
CIITA-210ENST00000575513 ZNF56Q15929 161 aa9.2□□□□□ -0.94
CIITA-210ENST00000575513 Q6ZRN7 208 aaPredicted RBP9.2□□□□□ -0.94
CIITA-210ENST00000575513 PGLYRP4Q96LB8 373 aa9.2□□□□□ -0.94
CIITA-210ENST00000575513 PKHD1P08F94 4074 aa9.2□□□□□ -0.94
CIITA-210ENST00000575513 SMIM27A0A1W2PRY6 76 aa9.19□□□□□ -0.94
CIITA-210ENST00000575513 F5H697 171 aa9.19□□□□□ -0.94
CIITA-210ENST00000575513 PPP1R2P9O14990 202 aa9.19□□□□□ -0.94
CIITA-210ENST00000575513 TWIST1Q15672 202 aa9.19□□□□□ -0.94
CIITA-210ENST00000575513 A0A1B0GUT8 65 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 IBA57-AS1B1ANH7 110 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 H7C1H1 209 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 ADCYAP1P18509 176 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.18□□□□□ -0.94
CIITA-210ENST00000575513 NEXN-AS1Q8NBZ9 246 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 BORCS7Q96B45 105 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 SEC11CQ9BY50 192 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 DPH3P1Q9H4G8 78 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 NAT8BQ9UHF3 227 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 DNAH11Q96DT5 4516 aa9.18□□□□□ -0.94
CIITA-210ENST00000575513 M0QY20 66 aa9.17□□□□□ -0.94
CIITA-210ENST00000575513 NUP35Q8NFH5 326 aa9.17□□□□□ -0.94
CIITA-210ENST00000575513 ANAPC16Q96DE5 110 aa9.17□□□□□ -0.94
CIITA-210ENST00000575513 DNAJC30Q96LL9 226 aa9.17□□□□□ -0.94
CIITA-210ENST00000575513 F8W036 122 aa9.16□□□□□ -0.94
CIITA-210ENST00000575513 MT-ND4LP03901 98 aa9.16□□□□□ -0.94
CIITA-210ENST00000575513 RIGQ13278 110 aa9.16□□□□□ -0.94
CIITA-210ENST00000575513 LAGE3Q14657 143 aa9.16□□□□□ -0.94
CIITA-210ENST00000575513 TMEM97Q5BJF2 176 aa9.16□□□□□ -0.94
CIITA-210ENST00000575513 SMIM15Q7Z3B0 74 aa9.16□□□□□ -0.94
CIITA-210ENST00000575513 DAZ4Q86SG3 579 aaKnown RBP9.16□□□□□ -0.94
CIITA-210ENST00000575513 CHCHD7Q9BUK0 85 aa9.16□□□□□ -0.94
CIITA-210ENST00000575513 DAZ3Q9NR90 486 aaKnown RBP9.16□□□□□ -0.94
CIITA-210ENST00000575513 MGPP08493 103 aa9.15□□□□□ -0.94
CIITA-210ENST00000575513 C10orf91Q5T1B1 145 aa9.15□□□□□ -0.94
CIITA-210ENST00000575513 FRZBQ92765 325 aa9.15□□□□□ -0.94
CIITA-210ENST00000575513 TNFRSF18Q9Y5U5 241 aa9.15□□□□□ -0.94
CIITA-210ENST00000575513 DYNC1H1Q14204 4646 aaKnown RBP9.14□□□□□ -0.95
CIITA-210ENST00000575513 TRBV6-8A0A0A6YYG3 113 aa9.14□□□□□ -0.95
CIITA-210ENST00000575513 SUMO4Q6EEV6 95 aa9.14□□□□□ -0.95
CIITA-210ENST00000575513 NIT1Q86X76 327 aa9.14□□□□□ -0.95
CIITA-210ENST00000575513 TMEM191AQ9H0A3 160 aa9.14□□□□□ -0.95
CIITA-210ENST00000575513 CARHSP1Q9Y2V2 147 aaKnown RBP9.14□□□□□ -0.95
CIITA-210ENST00000575513 A0A1B0GW15 77 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 EREGO14944 169 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 IGHV3-30P01768 117 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 IGHV3-33P01772 117 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 IGHV3-30-3P0DP02 117 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 IGHV3-30-5P0DP03 117 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 PKIAP61925 76 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 RASL11AQ6T310 242 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 NIT2Q9NQR4 276 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 URGCP-MRPS24S4R325 110 aa9.13□□□□□ -0.95
CIITA-210ENST00000575513 TRAV8-3A0A0A6YYJ7 113 aa9.12□□□□□ -0.95
CIITA-210ENST00000575513 ELOBQ15370 118 aa9.12□□□□□ -0.95
CIITA-210ENST00000575513 A0A087WX48 190 aa9.11□□□□□ -0.95
CIITA-210ENST00000575513 KCNIP4Q6PIL6 250 aa9.11□□□□□ -0.95
CIITA-210ENST00000575513 TM2D2Q9BX73 214 aa9.11□□□□□ -0.95
CIITA-210ENST00000575513 CTDSP1Q9GZU7 261 aa9.11□□□□□ -0.95
CIITA-210ENST00000575513 PGPEP1Q9NXJ5 209 aa9.11□□□□□ -0.95
CIITA-210ENST00000575513 A0A1B0GXF2 115 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 S100A8P05109 93 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 ATP5L2Q7Z4Y8 100 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 SPATA12Q7Z6I5 190 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 GATD1Q8NB37 220 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 RNF185Q96GF1 192 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 IMMP2LQ96T52 175 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 COX11Q9Y6N1 276 aa9.1□□□□□ -0.95
CIITA-210ENST00000575513 A0A087WTM6 91 aa9.09□□□□□ -0.95
CIITA-210ENST00000575513 HBBP68871 147 aa9.09□□□□□ -0.95
CIITA-210ENST00000575513 IQCJQ1A5X6 159 aa9.09□□□□□ -0.95
CIITA-210ENST00000575513 NTM-AS1Q6ZSK4 140 aa9.09□□□□□ -0.95
CIITA-210ENST00000575513 Q8N3U1 123 aa9.09□□□□□ -0.95
CIITA-210ENST00000575513 MRAP2Q96G30 205 aa9.09□□□□□ -0.95
CIITA-210ENST00000575513 TRBV25-1A0A075B6N4 114 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 C16orf90A8MZG2 172 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 TMEM262E9PQX1 116 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 PSCAO43653 123 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 RAB4AP20338 218 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 FAM104BQ5XKR9 115 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 CDPF1Q6NVV7 123 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 AMN1Q8IY45 258 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 CLRN3Q8NCR9 226 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 TMEM242Q9NWH2 141 aa9.08□□□□□ -0.96
CIITA-210ENST00000575513 TRAV26-2A0A0B4J265 109 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 IGHV1-24A0A0C4DH33 117 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 CAMPP49913 170 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 KRTAP10-2P60368 255 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 Q0VG73 95 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 RHEBQ15382 184 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 MRPL54Q6P161 138 aaKnown RBP9.07□□□□□ -0.96
CIITA-210ENST00000575513 RMI2Q96E14 147 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms