RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 ZNF575Q86XF7 245 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 C11orf21Q9P2W6 132 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 TWIST1Q15672 202 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 LYRM7Q5U5X0 104 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 HHLA3Q9XRX5 114 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 GTSCR1Q86UQ5 136 aa12.02□□□□□ -0.49
USP43-204ENST00000573955 MSRB1Q9NZV6 116 aa12.02□□□□□ -0.49
USP43-204ENST00000573955 SOCS3O14543 225 aa12.02□□□□□ -0.49
USP43-204ENST00000573955 HLA-DRB4P13762 266 aa12.02□□□□□ -0.49
USP43-204ENST00000573955 PRR9Q5T870 116 aa12.02□□□□□ -0.49
USP43-204ENST00000573955 AMN1Q8IY45 258 aa12.02□□□□□ -0.49
USP43-204ENST00000573955 MRPL53Q96EL3 112 aaKnown RBP12.02□□□□□ -0.49
USP43-204ENST00000573955 HLA-DRB4X5D2U9 266 aa12.02□□□□□ -0.49
USP43-204ENST00000573955 F8WDY8 70 aa12.01□□□□□ -0.49
USP43-204ENST00000573955 SYNJ2BPP57105 145 aa12.01□□□□□ -0.49
USP43-204ENST00000573955 C9orf47Q6ZRZ4 202 aa12.01□□□□□ -0.49
USP43-204ENST00000573955 C18orf65Q6ZTR6 163 aa12.01□□□□□ -0.49
USP43-204ENST00000573955 NIPBLQ6KC79 2804 aaeCLIP12.01□□□□□ -0.49
USP43-204ENST00000573955 F5H768 121 aa12.01□□□□□ -0.49
USP43-204ENST00000573955 DEFB136Q30KP8 78 aa12.01□□□□□ -0.49
USP43-204ENST00000573955 ZNF580Q9UK33 172 aa12.01□□□□□ -0.49
USP43-204ENST00000573955 AGRNO00468 2067 aa12□□□□□ -0.49
USP43-204ENST00000573955 IGHV4OR15-8A0A075B7B6 117 aa12□□□□□ -0.49
USP43-204ENST00000573955 A0A087WW49 117 aa12□□□□□ -0.49
USP43-204ENST00000573955 IGKV3D-20A0A0C4DH25 116 aa12□□□□□ -0.49
USP43-204ENST00000573955 IGKCP01834 107 aa12□□□□□ -0.49
USP43-204ENST00000573955 ZFP2Q6ZN57 461 aa12□□□□□ -0.49
USP43-204ENST00000573955 SBSPONQ8IVN8 264 aa12□□□□□ -0.49
USP43-204ENST00000573955 SETXQ7Z333 2677 aaKnown RBP12□□□□□ -0.49
USP43-204ENST00000573955 HIVEP2P31629 2446 aa12□□□□□ -0.49
USP43-204ENST00000573955 SCGB1C2P0DMR2 95 aa12□□□□□ -0.49
USP43-204ENST00000573955 SFTA2Q6UW10 78 aa12□□□□□ -0.49
USP43-204ENST00000573955 ANK3Q12955 4377 aaKnown RBP12□□□□□ -0.49
USP43-204ENST00000573955 WNK1Q9H4A3 2382 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 IGLC6P0CF74 106 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 CHCHD5Q9BSY4 110 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 EMP1P54849 157 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 KHDC1LQ5JSQ8 128 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 ZC2HC1BQ5TFG8 222 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 TMEM101Q96IK0 257 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 ZMAT4Q9H898 229 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 HIVEP1P15822 2718 aa11.99□□□□□ -0.49
USP43-204ENST00000573955 TRBV7-3A0A075B6L6 115 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 MYMXA0A1B0GTQ4 84 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 D6R8Y8 96 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 SMKR1H3BMG3 65 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 LINC01559Q495D7 138 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 C15orf53Q8NAA6 179 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 PRADC1Q9BSG0 188 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 LGALS1P09382 135 aaKnown RBP11.98□□□□□ -0.49
USP43-204ENST00000573955 MAPKAPK5-AS1Q8N8E1 139 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 DUX3Q96PT4 197 aa11.98□□□□□ -0.49
USP43-204ENST00000573955 LINC01549A6NIU2 74 aa11.97□□□□□ -0.49
USP43-204ENST00000573955 SPRY2O43597 315 aa11.97□□□□□ -0.49
USP43-204ENST00000573955 FN1P02751 2386 aaKnown RBP11.96□□□□□ -0.49
USP43-204ENST00000573955 A0A1B0GX51 115 aa11.96□□□□□ -0.49
USP43-204ENST00000573955 K7EMT4 169 aa11.96□□□□□ -0.49
USP43-204ENST00000573955 DUSP14O95147 198 aaKnown RBP11.96□□□□□ -0.49
USP43-204ENST00000573955 ELANEP08246 267 aa11.96□□□□□ -0.49
USP43-204ENST00000573955 HOXD3P31249 432 aaPredicted RBP11.96□□□□□ -0.49
USP43-204ENST00000573955 UBE2D3P61077 147 aa11.96□□□□□ -0.49
USP43-204ENST00000573955 UBE2D2P62837 147 aa11.96□□□□□ -0.49
USP43-204ENST00000573955 OVOL1O14753 267 aa11.96□□□□□ -0.5
USP43-204ENST00000573955 FAM104BQ5XKR9 115 aa11.96□□□□□ -0.5
USP43-204ENST00000573955 ZNF493Q6ZR52 646 aa11.96□□□□□ -0.5
USP43-204ENST00000573955 SORL1Q92673 2214 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 TMEM89A2RUT3 159 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 NDUFA7O95182 113 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 PRSS1P07477 247 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 MRPL51Q4U2R6 128 aaKnown RBP11.95□□□□□ -0.5
USP43-204ENST00000573955 C9orf153Q5TBE3 101 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 EDA2RQ9HAV5 297 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 DPM2O94777 84 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 TCL1BO95988 128 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 RNASE4P34096 147 aaKnown RBP11.95□□□□□ -0.5
USP43-204ENST00000573955 SLURP1P55000 103 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 ZFAND2AQ8N6M9 145 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 GATD1Q8NB37 220 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 DCANP1Q8TF63 244 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 LINC00477Q96M19 166 aa11.95□□□□□ -0.5
USP43-204ENST00000573955 KRTAP1-1Q07627 177 aa11.94□□□□□ -0.5
USP43-204ENST00000573955 UBE2E2Q96LR5 201 aa11.94□□□□□ -0.5
USP43-204ENST00000573955 JMJD1CQ15652 2540 aa11.94□□□□□ -0.5
USP43-204ENST00000573955 NPYP01303 97 aa11.94□□□□□ -0.5
USP43-204ENST00000573955 IGKV3-20P01619 116 aa11.94□□□□□ -0.5
USP43-204ENST00000573955 SRSF2Q01130 221 aaKnown RBP11.94□□□□□ -0.5
USP43-204ENST00000573955 C10orf126Q8N4M7 172 aa11.94□□□□□ -0.5
USP43-204ENST00000573955 C11orf44Q8N8P7 122 aa11.94□□□□□ -0.5
USP43-204ENST00000573955 GAS8-AS1O95177 125 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 HERVK_113P63121 156 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 MYOZ3Q8TDC0 251 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 BAALCQ8WXS3 180 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 DNAJC9-AS1A6NH13 148 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 LINC01619G3V211 115 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 CKS2P33552 79 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 ODF3Q96PU9 254 aa11.93□□□□□ -0.5
USP43-204ENST00000573955 TEP1Q99973 2627 aaKnown RBP11.93□□□□□ -0.5
USP43-204ENST00000573955 ORMDL3Q8N138 153 aa11.92□□□□□ -0.5
USP43-204ENST00000573955 MRAPQ8TCY5 172 aa11.92□□□□□ -0.5
USP43-204ENST00000573955 TRAV8-4A0A0B4J246 113 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms