RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 RMI2Q96E14 147 aa11.8□□□□□ -0.52
CHD3-214ENST00000572579 FAT3Q8TDW7 4589 aa11.8□□□□□ -0.52
CHD3-214ENST00000572579 TRAV1-1A0A0B4J248 108 aa11.79□□□□□ -0.52
CHD3-214ENST00000572579 TMEM262E9PQX1 116 aa11.79□□□□□ -0.52
CHD3-214ENST00000572579 PFDN1O60925 122 aa11.79□□□□□ -0.52
CHD3-214ENST00000572579 C15orf54Q8N8G6 183 aa11.79□□□□□ -0.52
CHD3-214ENST00000572579 GNG13Q9P2W3 67 aa11.79□□□□□ -0.52
CHD3-214ENST00000572579 RAB19A4D1S5 217 aa11.78□□□□□ -0.52
CHD3-214ENST00000572579 SPANXN1Q5VSR9 72 aa11.78□□□□□ -0.52
CHD3-214ENST00000572579 KRTAP26-1Q6PEX3 210 aa11.78□□□□□ -0.52
CHD3-214ENST00000572579 VAX2Q9UIW0 290 aa11.78□□□□□ -0.52
CHD3-214ENST00000572579 C19orf71A6NCJ1 209 aa11.77□□□□□ -0.53
CHD3-214ENST00000572579 F5H697 171 aa11.77□□□□□ -0.53
CHD3-214ENST00000572579 IGLC6P0CF74 106 aa11.77□□□□□ -0.53
CHD3-214ENST00000572579 ELOBQ15370 118 aa11.77□□□□□ -0.53
CHD3-214ENST00000572579 PKHD1L1Q86WI1 4243 aa11.76□□□□□ -0.53
CHD3-214ENST00000572579 M0QY20 66 aa11.76□□□□□ -0.53
CHD3-214ENST00000572579 CENPWQ5EE01 88 aa11.76□□□□□ -0.53
CHD3-214ENST00000572579 CHAC1Q9BUX1 264 aa11.76□□□□□ -0.53
CHD3-214ENST00000572579 TRBV20OR9-2A0A075B6H5 130 aa11.75□□□□□ -0.53
CHD3-214ENST00000572579 Q0VG73 95 aa11.75□□□□□ -0.53
CHD3-214ENST00000572579 CIRBP-AS1Q8TBR5 109 aa11.75□□□□□ -0.53
CHD3-214ENST00000572579 CHCHD5Q9BSY4 110 aa11.75□□□□□ -0.53
CHD3-214ENST00000572579 ANGP03950 147 aaKnown RBP11.74□□□□□ -0.53
CHD3-214ENST00000572579 RBX1P62877 108 aa11.74□□□□□ -0.53
CHD3-214ENST00000572579 MANBALQ9NQG1 85 aa11.74□□□□□ -0.53
CHD3-214ENST00000572579 PRR34Q9NV39 138 aa11.74□□□□□ -0.53
CHD3-214ENST00000572579 EIF5AP63241 154 aaKnown RBP11.73□□□□□ -0.53
CHD3-214ENST00000572579 GAGE6Q13070 117 aa11.73□□□□□ -0.53
CHD3-214ENST00000572579 KCNIP4Q6PIL6 250 aa11.73□□□□□ -0.53
CHD3-214ENST00000572579 OR2D3Q8NGH3 330 aa11.73□□□□□ -0.53
CHD3-214ENST00000572579 C1orf43Q9BWL3 253 aa11.73□□□□□ -0.53
CHD3-214ENST00000572579 USP17L23D6RBM5 183 aa11.72□□□□□ -0.53
CHD3-214ENST00000572579 PLA2G1BP04054 148 aaKnown RBP11.72□□□□□ -0.53
CHD3-214ENST00000572579 PRSS1P07477 247 aa11.72□□□□□ -0.53
CHD3-214ENST00000572579 SULT1A2P50226 295 aa11.72□□□□□ -0.53
CHD3-214ENST00000572579 SUMO4Q6EEV6 95 aa11.72□□□□□ -0.53
CHD3-214ENST00000572579 FER1L6-AS1Q8NA97 138 aa11.72□□□□□ -0.53
CHD3-214ENST00000572579 AP1S3Q96PC3 154 aa11.72□□□□□ -0.53
CHD3-214ENST00000572579 TPPP3Q9BW30 176 aa11.72□□□□□ -0.53
CHD3-214ENST00000572579 IQCJQ1A5X6 159 aa11.71□□□□□ -0.53
CHD3-214ENST00000572579 CLPSL2Q6UWE3 100 aa11.71□□□□□ -0.53
CHD3-214ENST00000572579 LINC00269Q8N2A0 174 aa11.71□□□□□ -0.53
CHD3-214ENST00000572579 HMCN2Q8NDA2 5059 aa11.7□□□□□ -0.54
CHD3-214ENST00000572579 KRTAP29-1A8MX34 341 aaPredicted RBP11.7□□□□□ -0.54
CHD3-214ENST00000572579 RAB5CP51148 216 aa11.7□□□□□ -0.54
CHD3-214ENST00000572579 DEFB104AQ8WTQ1 72 aa11.7□□□□□ -0.54
CHD3-214ENST00000572579 GFRA4Q9GZZ7 299 aa11.7□□□□□ -0.54
CHD3-214ENST00000572579 MGPP08493 103 aa11.69□□□□□ -0.54
CHD3-214ENST00000572579 SMIM17P0DL12 118 aa11.69□□□□□ -0.54
CHD3-214ENST00000572579 MEF2BQ02080 365 aaPredicted RBP11.69□□□□□ -0.54
CHD3-214ENST00000572579 LYZL1Q6UWQ5 148 aa11.69□□□□□ -0.54
CHD3-214ENST00000572579 C20orf203Q8NBC4 194 aa11.69□□□□□ -0.54
CHD3-214ENST00000572579 PANO1I0J062 215 aa11.68□□□□□ -0.54
CHD3-214ENST00000572579 CRPP02741 224 aa11.68□□□□□ -0.54
CHD3-214ENST00000572579 GNG4P50150 75 aa11.68□□□□□ -0.54
CHD3-214ENST00000572579 NKX2-5P52952 324 aaPredicted RBP11.68□□□□□ -0.54
CHD3-214ENST00000572579 RPS20P60866 119 aaKnown RBP11.68□□□□□ -0.54
CHD3-214ENST00000572579 MIAQ16674 131 aa11.68□□□□□ -0.54
CHD3-214ENST00000572579 DAZAP1Q96EP5 407 aaKnown RBP11.68□□□□□ -0.54
CHD3-214ENST00000572579 IGLV4-60A0A075B6I1 120 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 TRBV25-1A0A075B6N4 114 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 HLA-DQA1P01909 254 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 CACNG7P62955 275 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 TMEM97Q5BJF2 176 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 TCTE3Q8IZS6 198 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 C9orf62Q8N4C0 152 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 NUDT10Q8NFP7 164 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 NUDT11Q96G61 164 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 MED9Q9NWA0 146 aa11.67□□□□□ -0.54
CHD3-214ENST00000572579 IGHV1-24A0A0C4DH33 117 aa11.66□□□□□ -0.54
CHD3-214ENST00000572579 J3QL48 77 aa11.66□□□□□ -0.54
CHD3-214ENST00000572579 P01737 135 aa11.66□□□□□ -0.54
CHD3-214ENST00000572579 BCL2P10415 239 aa11.66□□□□□ -0.54
CHD3-214ENST00000572579 NTF3P20783 257 aa11.66□□□□□ -0.54
CHD3-214ENST00000572579 C14orf177Q52M58 125 aa11.66□□□□□ -0.54
CHD3-214ENST00000572579 SMIM12Q96EX1 92 aa11.66□□□□□ -0.54
CHD3-214ENST00000572579 K7EN84 100 aa11.65□□□□□ -0.54
CHD3-214ENST00000572579 PDE6DO43924 150 aa11.65□□□□□ -0.54
CHD3-214ENST00000572579 PKIAP61925 76 aa11.65□□□□□ -0.54
CHD3-214ENST00000572579 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.65□□□□□ -0.54
CHD3-214ENST00000572579 IGLV10-54A0A075B6I4 117 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 F2Z2F3 143 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 IFNA1P01562 189 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 SLPIP03973 132 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 CTRLP40313 264 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 REG3AQ06141 175 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 EIF5AL1Q6IS14 154 aaKnown RBP11.64□□□□□ -0.55
CHD3-214ENST00000572579 RASL11AQ6T310 242 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 SDIM1Q6ZPB5 146 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 C9orf163Q8N9P6 203 aa11.64□□□□□ -0.55
CHD3-214ENST00000572579 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.64□□□□□ -0.55
CHD3-214ENST00000572579 HNRNPA3P51991 378 aaKnown RBP11.63□□□□□ -0.55
CHD3-214ENST00000572579 FOXA3P55318 350 aaPredicted RBP11.63□□□□□ -0.55
CHD3-214ENST00000572579 DGAT2L7PQ6IED9 249 aa11.63□□□□□ -0.55
CHD3-214ENST00000572579 SLC51BQ86UW2 128 aa11.63□□□□□ -0.55
CHD3-214ENST00000572579 OCC1Q8TAD7 63 aa11.63□□□□□ -0.55
CHD3-214ENST00000572579 CNFNQ9BYD5 112 aa11.63□□□□□ -0.55
CHD3-214ENST00000572579 RNASE7Q9H1E1 156 aaKnown RBP11.63□□□□□ -0.55
CHD3-214ENST00000572579 A0A1B0GUV1 79 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 248.1 ms