RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PIK3CD-AS1Q5SR53 167 aa9.39□□□□□ -0.91
CLN3-235ENST00000568497 NEXN-AS1Q8NBZ9 246 aa9.39□□□□□ -0.91
CLN3-235ENST00000568497 RHODO00212 210 aa9.38□□□□□ -0.91
CLN3-235ENST00000568497 CTRLP40313 264 aa9.38□□□□□ -0.91
CLN3-235ENST00000568497 TMEM241Q24JQ0 296 aa9.38□□□□□ -0.91
CLN3-235ENST00000568497 SUMO4Q6EEV6 95 aa9.38□□□□□ -0.91
CLN3-235ENST00000568497 ISOC2Q96AB3 205 aa9.38□□□□□ -0.91
CLN3-235ENST00000568497 DNAJC30Q96LL9 226 aa9.38□□□□□ -0.91
CLN3-235ENST00000568497 BIN3Q9NQY0 253 aa9.38□□□□□ -0.91
CLN3-235ENST00000568497 GAS8-AS1O95177 125 aa9.37□□□□□ -0.91
CLN3-235ENST00000568497 AP1S3Q96PC3 154 aa9.37□□□□□ -0.91
CLN3-235ENST00000568497 V9GYV3 84 aa9.37□□□□□ -0.91
CLN3-235ENST00000568497 XKRY2A2RUG3 117 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 FAM229AH3BQW9 127 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 SMIM17P0DL12 118 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 RAB4BP61018 213 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 RAB14P61106 215 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 CACNG7P62955 275 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 SERTAD4-AS1Q5TG53 156 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 FAM231DQ6ZW35 169 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 GTSF1LQ9H1H1 148 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 NAT8Q9UHE5 227 aa9.36□□□□□ -0.91
CLN3-235ENST00000568497 UBE2D3P61077 147 aa9.35□□□□□ -0.91
CLN3-235ENST00000568497 UBE2D2P62837 147 aa9.35□□□□□ -0.91
CLN3-235ENST00000568497 TTC32Q5I0X7 151 aa9.35□□□□□ -0.91
CLN3-235ENST00000568497 LY96Q9Y6Y9 160 aa9.35□□□□□ -0.91
CLN3-235ENST00000568497 A0A1W2PPQ1 181 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 HIGD1CA8MV81 97 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 M0QY20 66 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 NDUFS6O75380 124 aaKnown RBP9.34□□□□□ -0.91
CLN3-235ENST00000568497 CLLU1Q5K131 121 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 LELP1Q5T871 98 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 OR10G8Q8NGN5 311 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 RPL39LQ96EH5 51 aaKnown RBP9.34□□□□□ -0.91
CLN3-235ENST00000568497 Q9HAA7 133 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 OSTCQ9NRP0 149 aa9.34□□□□□ -0.91
CLN3-235ENST00000568497 A8MWL6 223 aa9.33□□□□□ -0.92
CLN3-235ENST00000568497 F2Z2F3 143 aa9.33□□□□□ -0.92
CLN3-235ENST00000568497 RPL36AP83881 106 aaKnown RBP9.33□□□□□ -0.92
CLN3-235ENST00000568497 DAZ4Q86SG3 579 aaKnown RBP9.33□□□□□ -0.92
CLN3-235ENST00000568497 RPL36ALQ969Q0 106 aaKnown RBP9.33□□□□□ -0.92
CLN3-235ENST00000568497 DAZ3Q9NR90 486 aaKnown RBP9.33□□□□□ -0.92
CLN3-235ENST00000568497 HMCN2Q8NDA2 5059 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 TRBV7-3A0A075B6L6 115 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 TRAV8-6A0A0B4J262 113 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 SMKR1H3BMG3 65 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 DNAH10OSP0CZ25 163 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 FAM74A3Q4VXF1 159 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 Q6ZRN7 208 aaPredicted RBP9.32□□□□□ -0.92
CLN3-235ENST00000568497 NTM-AS1Q6ZSK4 140 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 GATD1Q8NB37 220 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 NUP35Q8NFH5 326 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 TSKUQ8WUA8 353 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 DPH3P1Q9H4G8 78 aa9.32□□□□□ -0.92
CLN3-235ENST00000568497 EREGO14944 169 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 TRGC1P0CF51 173 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 ADCYAP1P18509 176 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 SH2D6Q7Z4S9 175 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 C15orf54Q8N8G6 183 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 CNFNQ9BYD5 112 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 PGPEP1Q9NXJ5 209 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 PLA2G2DQ9UNK4 145 aa9.31□□□□□ -0.92
CLN3-235ENST00000568497 TRBV10-1A0A0K0K1A3 114 aa9.3□□□□□ -0.92
CLN3-235ENST00000568497 NCR2O95944 276 aa9.3□□□□□ -0.92
CLN3-235ENST00000568497 TIRAPP58753 221 aa9.3□□□□□ -0.92
CLN3-235ENST00000568497 GAGE6Q13070 117 aa9.3□□□□□ -0.92
CLN3-235ENST00000568497 HAMPP81172 84 aa9.29□□□□□ -0.92
CLN3-235ENST00000568497 CT83Q5H943 113 aa9.29□□□□□ -0.92
CLN3-235ENST00000568497 LINC01556Q5JQF7 62 aa9.29□□□□□ -0.92
CLN3-235ENST00000568497 CDPF1Q6NVV7 123 aa9.29□□□□□ -0.92
CLN3-235ENST00000568497 MRPL54Q6P161 138 aaKnown RBP9.29□□□□□ -0.92
CLN3-235ENST00000568497 COMMD7Q86VX2 200 aa9.29□□□□□ -0.92
CLN3-235ENST00000568497 AMN1Q8IY45 258 aa9.29□□□□□ -0.92
CLN3-235ENST00000568497 RNF185Q96GF1 192 aa9.29□□□□□ -0.92
CLN3-235ENST00000568497 A0A1B0GUT8 65 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 TMEM262E9PQX1 116 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 RPS10P46783 165 aaKnown RBP9.28□□□□□ -0.92
CLN3-235ENST00000568497 CAMPP49913 170 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 KRTAP10-1P60331 282 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 WDR73Q6P4I2 378 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 RASL11AQ6T310 242 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 CLPSL2Q6UWE3 100 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 NIT1Q86X76 327 aa9.28□□□□□ -0.92
CLN3-235ENST00000568497 DNAH8Q96JB1 4490 aa9.27□□□□□ -0.93
CLN3-235ENST00000568497 Q8N976 141 aa9.27□□□□□ -0.93
CLN3-235ENST00000568497 SMDT1Q9H4I9 107 aa9.27□□□□□ -0.93
CLN3-235ENST00000568497 KLK12Q9UKR0 248 aa9.27□□□□□ -0.93
CLN3-235ENST00000568497 TRBV6-8A0A0A6YYG3 113 aa9.26□□□□□ -0.93
CLN3-235ENST00000568497 SMIM27A0A1W2PRY6 76 aa9.26□□□□□ -0.93
CLN3-235ENST00000568497 KRTAP29-1A8MX34 341 aaPredicted RBP9.26□□□□□ -0.93
CLN3-235ENST00000568497 WFDC2Q14508 124 aa9.26□□□□□ -0.93
CLN3-235ENST00000568497 MPV17L2Q567V2 206 aa9.26□□□□□ -0.93
CLN3-235ENST00000568497 BORCS7Q96B45 105 aa9.26□□□□□ -0.93
CLN3-235ENST00000568497 CHCHD5Q9BSY4 110 aa9.26□□□□□ -0.93
CLN3-235ENST00000568497 IBA57-AS1B1ANH7 110 aa9.25□□□□□ -0.93
CLN3-235ENST00000568497 LECT2O14960 151 aa9.25□□□□□ -0.93
CLN3-235ENST00000568497 GFRA4Q9GZZ7 299 aa9.25□□□□□ -0.93
CLN3-235ENST00000568497 NIT2Q9NQR4 276 aa9.25□□□□□ -0.93
CLN3-235ENST00000568497 TRAV9-2A0A087WT02 112 aa9.24□□□□□ -0.93
CLN3-235ENST00000568497 RAB4AP20338 218 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms