RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	APOC3	P02656	99 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	FGF7	P21781	194 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	ATP6V0C	P27449	155 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	C10orf91	Q5T1B1	145 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	KCNIP4	Q6PIL6	250 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	TMEM75	Q8N9X5	138 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	SPACA4	Q8TDM5	124 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	GTSF1	Q8WW33	167 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	CHCHD7	Q9BUK0	85 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	JPT2	Q9H910	190 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	TREM1	Q9NP99	234 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	KCNIP2	Q9NS61	270 aa		7.36	□□□□□ -1.23
CLK3-222	ENST00000568232	CARHSP1	Q9Y2V2	147 aa	Known RBP	7.36	□□□□□ -1.23
CLK3-222	ENST00000568232		A0A0U1RQV1	116 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	C17orf112	F2Z3M2	114 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232		F8W036	122 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	NDUFS6	O75380	124 aa	Known RBP	7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	CRP	P02741	224 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	FGF8	P55075	233 aa	Predicted RBP	7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	CFAP161	Q6P656	301 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	REG3G	Q6UW15	175 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	ZFP2	Q6ZN57	461 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	RNF185	Q96GF1	192 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	PLAC8	Q9NZF1	115 aa		7.35	□□□□□ -1.23
CLK3-222	ENST00000568232	RNASE3	P12724	160 aa	Known RBP	7.34	□□□□□ -1.23
CLK3-222	ENST00000568232	ZNF80	P51504	273 aa	Predicted RBP	7.34	□□□□□ -1.23
CLK3-222	ENST00000568232	UFSP1	Q6NVU6	142 aa		7.34	□□□□□ -1.23
CLK3-222	ENST00000568232	PTH2	Q96A98	100 aa		7.34	□□□□□ -1.23
CLK3-222	ENST00000568232	NPCDR1	Q9BY65	106 aa		7.34	□□□□□ -1.23
CLK3-222	ENST00000568232	IGHV3-64	A0A075B6Q5	118 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	MUC21	A0A0G2JKD1	596 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	OR7C2	O60412	319 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	IFNA1	P01562	189 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	ANG	P03950	147 aa	Known RBP	7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	SLPI	P03973	132 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	MPV17L2	Q567V2	206 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	KRTAP26-1	Q6PEX3	210 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	SPINK6	Q6UWN8	80 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	GOLT1A	Q6ZVE7	132 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	FAM213B	Q8TBF2	198 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	SGK494	Q96LW2	274 aa		7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	WDR61	Q9GZS3	305 aa	Known RBP	7.33	□□□□□ -1.24
CLK3-222	ENST00000568232	EIF5A2	Q9GZV4	153 aa	Known RBP	7.33	□□□□□ -1.24
CLK3-222	ENST00000568232		H3BS24	57 aa		7.32	□□□□□ -1.24
CLK3-222	ENST00000568232	CNBP	P62633	177 aa	Known RBP	7.32	□□□□□ -1.24
CLK3-222	ENST00000568232	CLPSL2	Q6UWE3	100 aa		7.32	□□□□□ -1.24
CLK3-222	ENST00000568232	MBD3L1	Q8WWY6	194 aa		7.32	□□□□□ -1.24
CLK3-222	ENST00000568232	NKX6-2	Q9C056	277 aa	Predicted RBP	7.32	□□□□□ -1.24
CLK3-222	ENST00000568232	hDV102S1	A0JD36	115 aa		7.31	□□□□□ -1.24
CLK3-222	ENST00000568232		A8MWV9	139 aa		7.31	□□□□□ -1.24
CLK3-222	ENST00000568232	EIF3G	O75821	320 aa	Known RBP eCLIP	7.31	□□□□□ -1.24
CLK3-222	ENST00000568232	UBE2L3	P68036	154 aa	Known RBP	7.31	□□□□□ -1.24
CLK3-222	ENST00000568232	SRSF9	Q13242	221 aa	Known RBP eCLIP	7.31	□□□□□ -1.24
CLK3-222	ENST00000568232	KHDC3L	Q587J8	217 aa		7.31	□□□□□ -1.24
CLK3-222	ENST00000568232	OR10G7	Q8NGN6	311 aa		7.31	□□□□□ -1.24
CLK3-222	ENST00000568232		A0A087WWL8	130 aa		7.3	□□□□□ -1.24
CLK3-222	ENST00000568232	GNG5	P63218	68 aa		7.3	□□□□□ -1.24
CLK3-222	ENST00000568232	MIA	Q16674	131 aa		7.3	□□□□□ -1.24
CLK3-222	ENST00000568232	CLRN3	Q8NCR9	226 aa		7.3	□□□□□ -1.24
CLK3-222	ENST00000568232	SFT2D1	Q8WV19	159 aa		7.3	□□□□□ -1.24
CLK3-222	ENST00000568232	KRTAP4-2	Q9BYR5	136 aa		7.3	□□□□□ -1.24
CLK3-222	ENST00000568232	ACTR3C	Q9C0K3	210 aa	Predicted RBP	7.3	□□□□□ -1.24
CLK3-222	ENST00000568232	RHEB	Q15382	184 aa		7.29	□□□□□ -1.24
CLK3-222	ENST00000568232	CMTM2	Q8TAZ6	248 aa		7.29	□□□□□ -1.24
CLK3-222	ENST00000568232	TRBV6-8	A0A0A6YYG3	113 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	CTXND1	A0A1B0GTU2	59 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232		B4DEV8	164 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232		H7C1H1	209 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	GCG	P01275	180 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	UBE2D3	P61077	147 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	UBE2D2	P62837	147 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	COX6A2	Q02221	97 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	MAJIN	Q3KP22	176 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	FAM74A4	Q5TZK3	123 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	OTOR	Q9NRC9	128 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	SMCO4	Q9NRQ5	59 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	FSIP2	Q5CZC0	6907 aa		7.28	□□□□□ -1.24
CLK3-222	ENST00000568232	IGLV10-54	A0A075B6I4	117 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	IGKV2-24	A0A0C4DH68	120 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	FHIT	P49789	147 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	PNRC1	Q12796	327 aa	Predicted RBP	7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	FAM74A3	Q4VXF1	159 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	LINC00269	Q8N2A0	174 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	STPG4	Q8N801	248 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	MANBAL	Q9NQG1	85 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	PRR34	Q9NV39	138 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	VAX2	Q9UIW0	290 aa		7.27	□□□□□ -1.25
CLK3-222	ENST00000568232	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	7.26	□□□□□ -1.25
CLK3-222	ENST00000568232		A0A1W2PPV4	95 aa		7.26	□□□□□ -1.25
CLK3-222	ENST00000568232	PRSS3P2	Q8NHM4	247 aa		7.26	□□□□□ -1.25
CLK3-222	ENST00000568232	CHCHD5	Q9BSY4	110 aa		7.26	□□□□□ -1.25
CLK3-222	ENST00000568232	AP5S1	Q9NUS5	200 aa		7.26	□□□□□ -1.25
CLK3-222	ENST00000568232	TRBV7-3	A0A075B6L6	115 aa		7.25	□□□□□ -1.25
CLK3-222	ENST00000568232	IGKV3D-20	A0A0C4DH25	116 aa		7.25	□□□□□ -1.25
CLK3-222	ENST00000568232	MAP1LC3B2	A6NCE7	125 aa		7.25	□□□□□ -1.25
CLK3-222	ENST00000568232	TMEM250	H0YL14	139 aa		7.25	□□□□□ -1.25
CLK3-222	ENST00000568232	BCL2	P10415	239 aa		7.25	□□□□□ -1.25
CLK3-222	ENST00000568232	ADCYAP1	P18509	176 aa		7.25	□□□□□ -1.25
CLK3-222	ENST00000568232	S100A4	P26447	101 aa	Known RBP	7.25	□□□□□ -1.25
CLK3-222	ENST00000568232	RPL36A	P83881	106 aa	Known RBP	7.25	□□□□□ -1.25

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms