RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PLEKHH2Q8IVE3 1493 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 IFT140Q96RY7 1462 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 ARHGAP35Q9NRY4 1499 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 CDK12Q9NYV4 1490 aaPredicted RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 ABCC3O15438 1527 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 PIGBOS1A0A0B4J2F0 54 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 TRBV10-1A0A0K0K1A3 114 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 TRBV10-3A0A0K0K1G6 114 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 TMEM30CPA0ZSE6 113 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 CCL16O15467 120 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 SSSCA1O60232 199 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 IGHV3-33P01772 117 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 IGKCP01834 107 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 MT-ATP8P03928 68 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 TFF1P04155 84 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 LINC00032P0C843 101 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 SLC25A6P12236 298 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 RNASE3P12724 160 aaKnown RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 IL7P13232 177 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 COX7CP15954 63 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 CBLN1P23435 193 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 SNCAP37840 140 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 ATP5EP56381 51 aaPredicted RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 UBE2G1P62253 170 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 CNBPP62633 177 aaKnown RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 DCDP81605 110 aaKnown RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 RBM3P98179 157 aaKnown RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 RHOHQ15669 191 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 IQCJQ1A5X6 159 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 FAM74A1Q5RGS3 127 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 RPL7L1Q6DKI1 246 aaKnown RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 UNQ5815/PRO19632Q6UWF5 114 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 COMMD6Q7Z4G1 85 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 SBSPONQ8IVN8 264 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 C4orf33Q8N1A6 199 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 C4orf3Q8WVX3 66 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 LIMD2Q9BT23 127 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 VAMP8Q9BV40 100 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 DPY30Q9C005 99 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 DPH3P1Q9H4G8 78 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 ORMDL1Q9P0S3 153 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 SCP2D1Q9UJQ7 156 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 AP4S1Q9Y587 144 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 LINC00312Q9Y6C7 94 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 AFDNP55196 1824 aaKnown RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 KDM6BO15054 1643 aa0.56□□□□□ -2.32
VPS35-207ENST00000568191 SCAPERQ9BY12 1400 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 NRXN2Q9P2S2 1712 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 MARF1Q9Y4F3 1742 aaKnown RBP0.55□□□□□ -2.32
VPS35-207ENST00000568191 SHANK2Q9UPX8 1470 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 LOC285556D6RIA3 1793 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 ARHGEF12Q9NZN5 1544 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 TRAV13-2A0A0B4J235 113 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 CXorf51AA0A1B0GTR3 108 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 TRBV6-4A0A1B0GX49 114 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 NUPR2A6NF83 97 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 A6NIN4 97 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 H3BQ15 152 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 H3BRM9 83 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 PPYP01298 95 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 IGLC1P0CG04 106 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 Q0VG73 95 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 SPRNQ5BIV9 151 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 C9orf116Q5BN46 136 aaPredicted RBP0.55□□□□□ -2.32
VPS35-207ENST00000568191 PYY3Q5JQD4 70 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 C10orf55Q5SWW7 151 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 CSAG1Q6PB30 78 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 LYPD5Q6UWN5 251 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 LINC00299Q6ZSB3 139 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 SPTSSBQ8NFR3 76 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 C10orf82Q8WW14 230 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 IFI27L1Q96BM0 104 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 DMAC1Q96GE9 116 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 ODF3Q96PU9 254 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 REG4Q9BYZ8 158 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 ATG5Q9H1Y0 275 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 PRO1933Q9H354 126 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 MRPL35Q9NZE8 188 aaKnown RBP0.55□□□□□ -2.32
VPS35-207ENST00000568191 C22orf24Q9Y442 160 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 URB1O60287 2271 aaKnown RBP0.55□□□□□ -2.32
VPS35-207ENST00000568191 TOP2BQ02880 1626 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 PHRF1Q9P1Y6 1649 aaKnown RBP0.55□□□□□ -2.32
VPS35-207ENST00000568191 DOPEY2Q9Y3R5 2298 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 PLCE1Q9P212 2302 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 CLTCQ00610 1675 aaKnown RBP0.55□□□□□ -2.32
VPS35-207ENST00000568191 RREB1Q92766 1687 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 ANKRD36BQ8N2N9 1353 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 LRRIQ1Q96JM4 1722 aa0.55□□□□□ -2.32
VPS35-207ENST00000568191 GOLGA3Q08378 1498 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 MAGI2Q86UL8 1455 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 PXDNQ92626 1479 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 PRDM15P57071 1507 aaPredicted RBP0.54□□□□□ -2.32
VPS35-207ENST00000568191 MAP3K1Q13233 1512 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 ROS1P08922 2347 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 ZNF469Q96JG9 3925 aaPredicted RBP0.54□□□□□ -2.32
VPS35-207ENST00000568191 IGKV3-7A0A075B6H7 116 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 TRBV7-1A0A0A6YYK4 115 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 TRAV12-3A0A0B4J271 114 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 A0A0J9YY99 117 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 TRBV6-5A0A0K0K1A5 114 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms