RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 A6NDX4 124 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 BRI3O95415 125 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 IGHV3-33P01772 117 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 IGHV4-61A0A0C4DH41 118 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 RHODO00212 210 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 P0DMU3 169 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 FAM231AP0DMU4 169 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 FAM231CP0DMU5 169 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 ZNF22P17026 224 aaPredicted RBP10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 ABCA2Q9BZC7 2435 aa10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 IGLV1-40P01703 118 aa10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 C20orf203Q8NBC4 194 aa10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 TMEM263Q8WUH6 116 aaKnown RBP10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 TMEM262E9PQX1 116 aa10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 K7EMT4 169 aa10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 SPINK13Q1W4C9 94 aa10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 SS18L2Q9UHA2 77 aa10.36□□□□□ -0.75
VPS9D1-202ENST00000561976 I3L3M4 83 aa10.35□□□□□ -0.75
VPS9D1-202ENST00000561976 IGHV1OR15-1A0A075B7D0 117 aa10.35□□□□□ -0.75
VPS9D1-202ENST00000561976 EIF4EBP3O60516 100 aaPredicted RBP10.35□□□□□ -0.75
VPS9D1-202ENST00000561976 SNRPD3P62318 126 aaKnown RBP10.35□□□□□ -0.75
VPS9D1-202ENST00000561976 BEX4Q9NWD9 120 aaPredicted RBP10.35□□□□□ -0.75
VPS9D1-202ENST00000561976 ZNF580Q9UK33 172 aa10.35□□□□□ -0.75
VPS9D1-202ENST00000561976 A0A0B4J2C4 111 aa10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 PIMREGQ9BSJ6 248 aa10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 SPXQ9BT56 116 aa10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 IGLV4-3A0A075B6K6 122 aa10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 A0A0J9YX75 114 aa10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 ADARB2-AS1A8MUL3 147 aa10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 C19orf84I3L1E1 186 aa10.34□□□□□ -0.75
VPS9D1-202ENST00000561976 PRSS2P07478 247 aa10.33□□□□□ -0.76
VPS9D1-202ENST00000561976 HTN1P15515 57 aa10.32□□□□□ -0.76
VPS9D1-202ENST00000561976 ZFAND6Q6FIF0 208 aa10.32□□□□□ -0.76
VPS9D1-202ENST00000561976 A0A0J9YXY3 114 aa10.32□□□□□ -0.76
VPS9D1-202ENST00000561976 CD28P10747 220 aa10.32□□□□□ -0.76
VPS9D1-202ENST00000561976 ATXN8Q156A1 80 aa10.32□□□□□ -0.76
VPS9D1-202ENST00000561976 NTN5Q8WTR8 489 aaPredicted RBP10.32□□□□□ -0.76
VPS9D1-202ENST00000561976 ODF3Q96PU9 254 aa10.32□□□□□ -0.76
VPS9D1-202ENST00000561976 IGHV3-73A0A0B4J1V6 119 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 M0R2P5 195 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 TEX29Q8N6K0 151 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 RNF183Q96D59 192 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 ANAPC13Q9BS18 74 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 TIMM21Q9BVV7 248 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 ELANEP08246 267 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 IGHV3-30-3P0DP02 117 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 LY6DQ14210 128 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 HERV-K104P63124 156 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 LINC01620Q4KN68 170 aa10.31□□□□□ -0.76
VPS9D1-202ENST00000561976 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.31□□□□□ -0.766e-7■■■■□ 20.3
VPS9D1-202ENST00000561976 CFHR3Q02985 330 aa10.3□□□□□ -0.76
VPS9D1-202ENST00000561976 TRAV8-3A0A0A6YYJ7 113 aa10.3□□□□□ -0.76
VPS9D1-202ENST00000561976 RNASE13Q5GAN3 156 aaKnown RBP10.3□□□□□ -0.76
VPS9D1-202ENST00000561976 C10orf99Q6UWK7 81 aa10.3□□□□□ -0.76
VPS9D1-202ENST00000561976 CEMP1Q6PRD7 247 aaPredicted RBP10.29□□□□□ -0.76
VPS9D1-202ENST00000561976 SORL1Q92673 2214 aa10.29□□□□□ -0.76
VPS9D1-202ENST00000561976 COL12A1Q99715 3063 aa10.29□□□□□ -0.76
VPS9D1-202ENST00000561976 K7EQG2 157 aa10.29□□□□□ -0.76
VPS9D1-202ENST00000561976 TRGV11A0A075B6L2 103 aa10.28□□□□□ -0.76
VPS9D1-202ENST00000561976 M0QXV9 152 aa10.28□□□□□ -0.76
VPS9D1-202ENST00000561976 MAP1AP78559 2803 aaPredicted RBP10.28□□□□□ -0.76
VPS9D1-202ENST00000561976 TRIAP1O43715 76 aa10.28□□□□□ -0.76
VPS9D1-202ENST00000561976 SNCGO76070 127 aa10.28□□□□□ -0.76
VPS9D1-202ENST00000561976 PSMB8P28062 276 aa10.28□□□□□ -0.76
VPS9D1-202ENST00000561976 C10orf105Q8TEF2 133 aa10.28□□□□□ -0.76
VPS9D1-202ENST00000561976 SYNJ2BPP57105 145 aa10.27□□□□□ -0.76
VPS9D1-202ENST00000561976 PROK1P58294 105 aa10.27□□□□□ -0.76
VPS9D1-202ENST00000561976 NPC2P61916 151 aa10.27□□□□□ -0.76
VPS9D1-202ENST00000561976 DUX5Q96PT3 197 aa10.27□□□□□ -0.76
VPS9D1-202ENST00000561976 CCL19Q99731 98 aa10.27□□□□□ -0.76
VPS9D1-202ENST00000561976 MSMBP08118 114 aa10.27□□□□□ -0.77
VPS9D1-202ENST00000561976 TNFRSF18Q9Y5U5 241 aa10.27□□□□□ -0.77
VPS9D1-202ENST00000561976 TRBV30A0A0K0K1B3 111 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 TEX49A0A1B0GTD5 131 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 GATA3P23771 443 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 NDUFA12Q9UI09 145 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 IGHV4-30-2A0A087WSY4 118 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 GAGE2BQ13066 116 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 GAGE2EQ4V326 116 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 GAGE2DQ9UEU5 116 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 TRBV10-2A0A0K0K1G8 114 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 KNCNA6PVL3 124 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 ATP5J2P56134 94 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 MRPS36P82909 103 aaKnown RBP10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 PYGO1Q9Y3Y4 419 aa10.26□□□□□ -0.77
VPS9D1-202ENST00000561976 PRRC2AP48634 2157 aaKnown RBP10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 TRAV8-4A0A0B4J246 113 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 ADAMTSL4-AS1Q5T5F5 129 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 LITAFQ99732 161 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 CITED1Q99966 193 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 IGHV1-58A0A0C4DH39 117 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 A8MZ25 164 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 AVPP01185 164 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 C2orf82Q6UX34 121 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 ICOSQ9Y6W8 199 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 VPS13CQ709C8 3753 aa10.25□□□□□ -0.77
VPS9D1-202ENST00000561976 SPG11Q96JI7 2443 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 CSPG4Q6UVK1 2322 aa10.24□□□□□ -0.77
VPS9D1-202ENST00000561976 IGHV4-59P01825 116 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms