RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SHISA2Q6UWI4 295 aa5.49□□□□□ -1.53
VPS39-204ENST00000561818 C11orf72Q8NBR9 251 aa5.49□□□□□ -1.53
VPS39-204ENST00000561818 RPL36ALQ969Q0 106 aaKnown RBP5.49□□□□□ -1.53
VPS39-204ENST00000561818 SPANXA1Q9NS26 97 aa5.49□□□□□ -1.53
VPS39-204ENST00000561818 XCL2Q9UBD3 114 aa5.49□□□□□ -1.53
VPS39-204ENST00000561818 PYGO1Q9Y3Y4 419 aa5.49□□□□□ -1.53
VPS39-204ENST00000561818 A0A087WWL8 130 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 TRAV26-2A0A0B4J265 109 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 RBMY1BA6NDE4 496 aaKnown RBP5.48□□□□□ -1.53
VPS39-204ENST00000561818 RBMY1EA6NEQ0 496 aaKnown RBP5.48□□□□□ -1.53
VPS39-204ENST00000561818 LINC00587B1AMM8 73 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 H7C423 109 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 RBMY1DP0C7P1 496 aaKnown RBP5.48□□□□□ -1.53
VPS39-204ENST00000561818 COX8AP10176 69 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 AZU1P20160 251 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 SEC11AP67812 179 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 COTL1Q14019 142 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 ODF1Q14990 250 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 CFAP126Q5VTH2 177 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 OR4C5Q8NGB2 326 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 OVOL2Q9BRP0 275 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 C2orf88Q9BSF0 95 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 PRO1933Q9H354 126 aa5.48□□□□□ -1.53
VPS39-204ENST00000561818 AKAP9Q99996 3911 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 TRBV6-4A0A1B0GX49 114 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 LYRM9A8MSI8 78 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 PRB4P10163 310 aaPredicted RBP5.47□□□□□ -1.53
VPS39-204ENST00000561818 HTN1P15515 57 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 IGLL1P15814 213 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 GCSHP23434 173 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 PMVKQ15126 192 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 COL5A1-AS1Q5SY13 56 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 UFSP1Q6NVU6 142 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 PRADC1Q9BSG0 188 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 TIMM21Q9BVV7 248 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 C19orf73Q9NVV2 129 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 OTOGQ6ZRI0 2925 aa5.47□□□□□ -1.53
VPS39-204ENST00000561818 TRBV7-3A0A075B6L6 115 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 TRGV1A0A0A0MS02 117 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 H0Y8G0 127 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 RBMY1A1P0DJD3 496 aaKnown RBP5.46□□□□□ -1.54
VPS39-204ENST00000561818 RBMY1CP0DJD4 496 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 GATA1P15976 413 aaPredicted RBP5.46□□□□□ -1.54
VPS39-204ENST00000561818 FXYD7P58549 80 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 RBMY1FQ15415 496 aaKnown RBP5.46□□□□□ -1.54
VPS39-204ENST00000561818 CDPF1Q6NVV7 123 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 Q6ZQT7 251 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 SH2D6Q7Z4S9 175 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 C1orf158Q8N1D5 194 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 C20orf203Q8NBC4 194 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 RPL39LQ96EH5 51 aaKnown RBP5.46□□□□□ -1.54
VPS39-204ENST00000561818 C14orf144Q96I85 54 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 GTSF1LQ9H1H1 148 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 TP53TG1Q9Y2A0 90 aa5.46□□□□□ -1.54
VPS39-204ENST00000561818 CHTOPQ9Y3Y2 248 aaKnown RBP5.46□□□□□ -1.54
VPS39-204ENST00000561818 CSDC2Q9Y534 153 aaKnown RBP5.46□□□□□ -1.54
VPS39-204ENST00000561818 TRGV2A0A075B6R0 118 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 K7EQD1 137 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 MIFP14174 115 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 PRR31Q5SQ13 230 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.45□□□□□ -1.54
VPS39-204ENST00000561818 NEXN-AS1Q8NBZ9 246 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 OR11H2Q8NH07 326 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 PGPEP1Q9NXJ5 209 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 HIGD1BQ9P298 99 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 C2CD3Q4AC94 2353 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 NBPF19A0A087WUL8 3843 aa5.45□□□□□ -1.54
VPS39-204ENST00000561818 IGIPA6NJ69 53 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 A8MZ25 164 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 SPRY2O43597 315 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 ZNF25P17030 456 aaPredicted RBP5.44□□□□□ -1.54
VPS39-204ENST00000561818 MRPS36P82909 103 aaKnown RBP5.44□□□□□ -1.54
VPS39-204ENST00000561818 TAL2Q16559 108 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 C3orf56Q8N813 242 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 CSNK1G2-AS1Q8NCQ2 148 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 BAALCQ8WXS3 180 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 VCX2Q9H322 139 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 SELENOKQ9Y6D0 94 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 CSMD1Q96PZ7 3565 aa5.44□□□□□ -1.54
VPS39-204ENST00000561818 IGHV3OR16-12A0A075B7B8 117 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 A6NDN8 102 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 C11orf86A6NJI1 115 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 E9PLD3 99 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 TSHBP01222 138 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 HSD52Q0P140 79 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 ZC2HC1BQ5TFG8 222 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 LINC00173Q6ZV60 143 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 NFE4Q86UQ8 179 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 ATOH7Q8N100 152 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 MRPL16Q9NX20 251 aaKnown RBP5.43□□□□□ -1.54
VPS39-204ENST00000561818 MRPL35Q9NZE8 188 aaKnown RBP5.43□□□□□ -1.54
VPS39-204ENST00000561818 MUC4Q99102 2169 aa5.43□□□□□ -1.54
VPS39-204ENST00000561818 ZNF469Q96JG9 3925 aaPredicted RBP5.43□□□□□ -1.54
VPS39-204ENST00000561818 TRGV4A0A0C4DH28 118 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 TMEM238LA0A1B0GVL6 79 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 hDV102S1A0JD36 115 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 A6NJY4 79 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 H3BRM9 83 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 GAS8-AS1O95177 125 aa5.42□□□□□ -1.54
VPS39-204ENST00000561818 RPL35AP18077 110 aaKnown RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 375.3 ms