RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TINCRA0A1B0GVN0 87 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 RBAKDNA6NC62 111 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 C10orf142B7Z368 130 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 H3BVH4 76 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 J3QLI3 93 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 UPK2O00526 184 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV3-30P01768 117 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV3-33P01772 117 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV3-30-5P0DP03 117 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 PYYP10082 97 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 EFNA4P52798 201 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 PPP1CAP62136 330 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 CCL8P80075 99 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 SPINK9Q5DT21 86 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-208ENST00000559119 LYZL1Q6UWQ5 148 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 ASCL5Q7RTU5 278 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 SLC25A29Q8N8R3 303 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 TMEM263Q8WUH6 116 aaKnown RBP1.77□□□□□ -2.13
VPS13C-208ENST00000559119 EEF1AKMT3Q96AZ1 226 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 TTTY13Q9BZ97 58 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 AGPAT4-IT1Q9H0P7 198 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 EDA2RQ9HAV5 297 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 MRPL35Q9NZE8 188 aaKnown RBP1.77□□□□□ -2.13
VPS13C-208ENST00000559119 CACNA1CQ13936 2221 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 DYSFO75923 2080 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 NCOA6Q14686 2063 aaPredicted RBP1.76□□□□□ -2.13
VPS13C-208ENST00000559119 NCKAP5O14513 1909 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 IGLV3-12A0A075B6K2 115 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 IGKV1D-37A0A075B6S9 117 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 TRAV13-1A0A0B4J241 112 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 TRAV3A0A0B4J244 114 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 A0A0J9YX75 114 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 A0A0J9YY99 117 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 FAM236AA0A1B0GUQ0 79 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 FAM236BA0A1B0GV22 79 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 ZNF815PA8K554 130 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 LY6LH3BQJ8 138 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 BCE1O60756 84 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 NDUFC2O95298 119 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 CGB3P0DN86 165 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 CGB7P0DN87 165 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV3-43DP0DP04 118 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 COX6A1P12074 109 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 CRIP1P50238 77 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 GNG5P63218 68 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 MRPS36P82909 103 aaKnown RBP1.76□□□□□ -2.13
VPS13C-208ENST00000559119 ERHP84090 104 aaKnown RBP1.76□□□□□ -2.13
VPS13C-208ENST00000559119 PLGLAQ15195 96 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 ZNF56Q15929 161 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 C4orf26Q17RF5 130 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 DEFB110Q30KQ9 67 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 TMEM155Q4W5P6 130 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 ORMDL2Q53FV1 153 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 DUX4L9Q6RFH8 374 aaPredicted RBP1.76□□□□□ -2.13
VPS13C-208ENST00000559119 AAED1Q7RTV5 226 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 LINC00305Q7Z4B0 112 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 MRPL55Q7Z7F7 128 aaKnown RBP1.76□□□□□ -2.13
VPS13C-208ENST00000559119 CCL4L1Q8NHW4 92 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 COPS9Q8WXC6 57 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 TOMM6Q96B49 74 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 METTL26Q96S19 204 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 UPK3BQ9BT76 320 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 DYNLRB1Q9NP97 96 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 NDUFA4L2Q9NRX3 87 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 TIMM8BQ9Y5J9 83 aaPredicted RBP1.76□□□□□ -2.13
VPS13C-208ENST00000559119 V9GYY9 64 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 SPTBP11277 2137 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 MPDZO75970 2070 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 PTPRSQ13332 1948 aa1.76□□□□□ -2.13
VPS13C-208ENST00000559119 TRBV19A0A075B6N1 114 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 TRAV12-2A0A075B6T6 113 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 TMSB15BA0A087X1C1 80 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV1-69DA0A0B4J2H0 117 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 A0A0J9YW62 118 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 TEX49A0A1B0GTD5 131 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 TMEM223A0PJW6 202 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 SDHAF1A6NFY7 115 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 C11orf86A6NJI1 115 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 IQCF6A8MYZ5 107 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 SMKR1H3BMG3 65 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 J3QQQ9 107 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 LST1O00453 97 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 CCL16O15467 120 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 COX6CP09669 75 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 RPL18AQ02543 176 aaKnown RBP1.75□□□□□ -2.13
VPS13C-208ENST00000559119 ERCC8Q13216 396 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 PDE6HQ13956 83 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 FAM201AQ5SY85 155 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 HES3Q5TGS1 186 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 GUSBP11Q6P575 273 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 CEMP1Q6PRD7 247 aaPredicted RBP1.75□□□□□ -2.13
VPS13C-208ENST00000559119 C2orf82Q6UX34 121 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 HRCT1Q6UXD1 115 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 SCGB1D4Q6XE38 83 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 GOLT1AQ6ZVE7 132 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 PRNTQ86SH4 94 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 TMEM86BQ8N661 226 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 SERP2Q8N6R1 65 aa1.75□□□□□ -2.13
VPS13C-208ENST00000559119 DAND5Q8N907 189 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms