RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 BUB1B-PAK6H3BSN5 160 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 J3KT08 172 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 RPS28P62857 69 aaKnown RBP8.22□□□□□ -1.09
USP3-206ENST00000558157 KRTAP1-3Q8IUG1 177 aa8.22□□□□□ -1.09
USP3-206ENST00000558157 ODF3BA8MYP8 253 aa8.21□□□□□ -1.09
USP3-206ENST00000558157 ZNF56Q15929 161 aa8.21□□□□□ -1.09
USP3-206ENST00000558157 FASNP49327 2511 aaKnown RBP8.21□□□□□ -1.1
USP3-206ENST00000558157 UNC79Q9P2D8 2635 aa8.21□□□□□ -1.1
USP3-206ENST00000558157 IGIPA6NJ69 53 aa8.21□□□□□ -1.1
USP3-206ENST00000558157 F8W735 103 aaPredicted RBP8.21□□□□□ -1.1
USP3-206ENST00000558157 Q1RN00 199 aa8.21□□□□□ -1.1
USP3-206ENST00000558157 MAPK1IP1LQ8NDC0 245 aa8.21□□□□□ -1.1
USP3-206ENST00000558157 LENEPQ9Y5L5 61 aa8.21□□□□□ -1.1
USP3-206ENST00000558157 WNK2Q9Y3S1 2297 aa8.21□□□□□ -1.1
USP3-206ENST00000558157 MAP1AP78559 2803 aaPredicted RBP8.21□□□□□ -1.1
USP3-206ENST00000558157 CSMD1Q96PZ7 3565 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 SDHAF1A6NFY7 115 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 RNF223E7ERA6 249 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 MSMBP08118 114 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 COX6CP09669 75 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 MED14OSP0DP75 135 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 TSPEAR-AS2P59090 65 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 C9orf153Q5TBE3 101 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 POM121L12Q8N7R1 296 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 LINC00526Q96FQ7 95 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 Q96MF0 132 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 FANCD2OSQ96PS1 177 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 SMIM9A6NGZ8 99 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 LY6LH3BQJ8 138 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 LEPROTO15243 131 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 LINC00694P0DN24 101 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 C9orf47Q6ZRZ4 202 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 AGPAT4-IT1Q9H0P7 198 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 CR1P17927 2039 aa8.2□□□□□ -1.1
USP3-206ENST00000558157 HECTD1Q9ULT8 2610 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 PRAC2D3DTV9 90 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 H7C423 109 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 NPFFO15130 113 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 EIF4EBP3O60516 100 aaPredicted RBP8.19□□□□□ -1.1
USP3-206ENST00000558157 ZNF876PQ49A33 203 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 CITED2Q99967 270 aaPredicted RBP8.19□□□□□ -1.1
USP3-206ENST00000558157 PDZD2O15018 2839 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 B4DSR2 109 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 TSHBP01222 138 aa8.19□□□□□ -1.1
USP3-206ENST00000558157 FAM236AA0A1B0GUQ0 79 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 FAM236BA0A1B0GV22 79 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 NBR2O15453 112 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 TRIAP1O43715 76 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 IGFL4Q6B9Z1 124 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 NPBQ8NG41 125 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 METTL26Q96S19 204 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 DPM3Q9P2X0 92 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 UBE2E1P51965 193 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 TMEM219Q86XT9 240 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 MUSTN1Q8IVN3 82 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 LINC01356Q8N9X3 169 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 OR13C6PQ8NH95 151 aa8.18□□□□□ -1.1
USP3-206ENST00000558157 RPL39LQ96EH5 51 aaKnown RBP8.18□□□□□ -1.1
USP3-206ENST00000558157 TRGV11A0A075B6L2 103 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 IGHV4OR15-8A0A075B7B6 117 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 A0A087WW49 117 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 ELANEP08246 267 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 EMP1P54849 157 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 WFDC11Q8NEX6 87 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 TP53TG1Q9Y2A0 90 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 IGHV3OR16-10A0A075B7F0 116 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 TMEM223A0PJW6 202 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 H7C2G1 150 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 CTSGP08311 255 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 IGHV4-31P0DP07 118 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 CXCL5P42830 114 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 ICOSQ9Y6W8 199 aa8.17□□□□□ -1.1
USP3-206ENST00000558157 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.16□□□□□ -1.11e-6■■■■□ 20.5
USP3-206ENST00000558157 ITPR2Q14571 2701 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 AKAP9Q99996 3911 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 TRAV25A0A0B4J276 109 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 BUB3O43684 328 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 SAA4P35542 130 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 HERVK_113P63121 156 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 MINOS1Q5TGZ0 78 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 LINC00643Q86TS7 51 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 GPHB5Q86YW7 130 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 MINOS1-NBL1R4GNA1 71 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 ABCA1O95477 2261 aa8.16□□□□□ -1.1
USP3-206ENST00000558157 PRRC2AP48634 2157 aaKnown RBP8.16□□□□□ -1.1
USP3-206ENST00000558157 LST1O00453 97 aa8.15□□□□□ -1.1
USP3-206ENST00000558157 IGHV1-69P01742 117 aa8.15□□□□□ -1.1
USP3-206ENST00000558157 C14orf178Q8N769 122 aaPredicted RBP8.15□□□□□ -1.1
USP3-206ENST00000558157 ZNRF2Q8NHG8 242 aa8.15□□□□□ -1.1
USP3-206ENST00000558157 SVEP1Q4LDE5 3571 aa8.15□□□□□ -1.1
USP3-206ENST00000558157 VCYO14598 125 aa8.15□□□□□ -1.1
USP3-206ENST00000558157 ZNF256Q9Y2P7 627 aaPredicted RBP8.15□□□□□ -1.1
USP3-206ENST00000558157 AVPP01185 164 aa8.14□□□□□ -1.11
USP3-206ENST00000558157 IGHV4-38-2P0DP08 117 aa8.14□□□□□ -1.11
USP3-206ENST00000558157 CRYGAP11844 174 aa8.14□□□□□ -1.11
USP3-206ENST00000558157 FAM19A5Q7Z5A7 132 aaPredicted RBP8.14□□□□□ -1.11
USP3-206ENST00000558157 RNF182Q8N6D2 247 aa8.14□□□□□ -1.11
USP3-206ENST00000558157 PHLDA3Q9Y5J5 127 aa8.14□□□□□ -1.11
USP3-206ENST00000558157 S4R3C0 116 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms