RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 PIMREGQ9BSJ6 248 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 JPT2Q9H910 190 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 MUC4Q99102 2169 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 IGKV3-7A0A075B6H7 116 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 TRAV12-3A0A0B4J271 114 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 BRD3OSQ6XYD6 125 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 LINC01600Q96MT4 127 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 EDA2RQ9HAV5 297 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 ZNF256Q9Y2P7 627 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-232ENST00000557487 IGHV3OR16-10A0A075B7F0 116 aa12.1□□□□□ -0.47
SHMT2-232ENST00000557487 H3BUX3 64 aa12.1□□□□□ -0.47
SHMT2-232ENST00000557487 I3L3M4 83 aa12.1□□□□□ -0.47
SHMT2-232ENST00000557487 SNRPD3P62318 126 aaKnown RBP12.1□□□□□ -0.47
SHMT2-232ENST00000557487 ZNF56Q15929 161 aa12.1□□□□□ -0.47
SHMT2-232ENST00000557487 RNF152Q8N8N0 203 aa12.1□□□□□ -0.47
SHMT2-232ENST00000557487 C20orf203Q8NBC4 194 aa12.1□□□□□ -0.47
SHMT2-232ENST00000557487 TMEM89A2RUT3 159 aa12.09□□□□□ -0.47
SHMT2-232ENST00000557487 IGHV3-33P01772 117 aa12.09□□□□□ -0.47
SHMT2-232ENST00000557487 IGHV4-39P01824 125 aa12.09□□□□□ -0.47
SHMT2-232ENST00000557487 ERG28Q9UKR5 140 aa12.09□□□□□ -0.47
SHMT2-232ENST00000557487 RHODO00212 210 aa12.09□□□□□ -0.47
SHMT2-232ENST00000557487 LY6EQ16553 131 aa12.09□□□□□ -0.47
SHMT2-232ENST00000557487 TMEM263Q8WUH6 116 aaKnown RBP12.09□□□□□ -0.47
SHMT2-232ENST00000557487 IGHV1OR15-1A0A075B7D0 117 aa12.08□□□□□ -0.48
SHMT2-232ENST00000557487 A4D1N5 150 aa12.08□□□□□ -0.48
SHMT2-232ENST00000557487 ZNF22P17026 224 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-232ENST00000557487 FAM74A4Q5TZK3 123 aa12.08□□□□□ -0.48
SHMT2-232ENST00000557487 SFTA2Q6UW10 78 aa12.08□□□□□ -0.48
SHMT2-232ENST00000557487 GEMIN7Q9H840 131 aaKnown RBP12.08□□□□□ -0.48
SHMT2-232ENST00000557487 PYGO1Q9Y3Y4 419 aa12.08□□□□□ -0.48
SHMT2-232ENST00000557487 FLNBO75369 2602 aaKnown RBP12.08□□□□□ -0.48
SHMT2-232ENST00000557487 TRGV11A0A075B6L2 103 aa12.07□□□□□ -0.48
SHMT2-232ENST00000557487 CYSRT1A8MQ03 144 aa12.07□□□□□ -0.48
SHMT2-232ENST00000557487 ANKRD29Q8N6D5 301 aa12.07□□□□□ -0.48
SHMT2-232ENST00000557487 PTH2Q96A98 100 aa12.07□□□□□ -0.48
SHMT2-232ENST00000557487 M0R2P5 195 aa12.07□□□□□ -0.48
SHMT2-232ENST00000557487 SLC25A20O43772 301 aa12.07□□□□□ -0.48
SHMT2-232ENST00000557487 UTP20O75691 2785 aaKnown RBP12.07□□□□□ -0.48
SHMT2-232ENST00000557487 MT-ATP8P03928 68 aa12.06□□□□□ -0.48
SHMT2-232ENST00000557487 XGP55808 180 aa12.06□□□□□ -0.48
SHMT2-232ENST00000557487 ATXN8Q156A1 80 aa12.06□□□□□ -0.48
SHMT2-232ENST00000557487 IGHV4-38-2P0DP08 117 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 SRD5A1P18405 259 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 BLCAPP62952 87 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 FHL3Q13643 280 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 Q8N1Y9 231 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 IGLV4-3A0A075B6K6 122 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 K7EQG2 157 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 C10orf105Q8TEF2 133 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 TACC2O95359 2948 aa12.05□□□□□ -0.48
SHMT2-232ENST00000557487 IGHV4-61A0A0C4DH41 118 aa12.04□□□□□ -0.48
SHMT2-232ENST00000557487 PSMB8P28062 276 aa12.04□□□□□ -0.48
SHMT2-232ENST00000557487 NBPF19A0A087WUL8 3843 aa12.03□□□□□ -0.48
SHMT2-232ENST00000557487 TRAV2A0A0B4J234 112 aa12.03□□□□□ -0.48
SHMT2-232ENST00000557487 TRBV30A0A0K0K1B3 111 aa12.03□□□□□ -0.48
SHMT2-232ENST00000557487 MUSTN1Q8IVN3 82 aa12.03□□□□□ -0.48
SHMT2-232ENST00000557487 C9JAW5 83 aa12.03□□□□□ -0.48
SHMT2-232ENST00000557487 RNF183Q96D59 192 aa12.03□□□□□ -0.48
SHMT2-232ENST00000557487 UNC79Q9P2D8 2635 aa12.02□□□□□ -0.48
SHMT2-232ENST00000557487 A0A0J9YXY3 114 aa12.02□□□□□ -0.49
SHMT2-232ENST00000557487 KRTAP10-9P60411 292 aa12.02□□□□□ -0.49
SHMT2-232ENST00000557487 MRPS36P82909 103 aaKnown RBP12.02□□□□□ -0.49
SHMT2-232ENST00000557487 PIK3CD-AS1Q5SR53 167 aa12.02□□□□□ -0.49
SHMT2-232ENST00000557487 RAX2Q96IS3 184 aa12.01□□□□□ -0.49
SHMT2-232ENST00000557487 A0A0J9YXV3 536 aa12.01□□□□□ -0.49
SHMT2-232ENST00000557487 RPL13AP40429 203 aaKnown RBP12.01□□□□□ -0.49
SHMT2-232ENST00000557487 ZFAND6Q6FIF0 208 aa12.01□□□□□ -0.49
SHMT2-232ENST00000557487 OPRPNQ99935 248 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-232ENST00000557487 TIMM21Q9BVV7 248 aa12.01□□□□□ -0.49
SHMT2-232ENST00000557487 SPANXDQ9BXN6 97 aa12.01□□□□□ -0.49
SHMT2-232ENST00000557487 SPANXCQ9NY87 97 aa12.01□□□□□ -0.49
SHMT2-232ENST00000557487 MED13LQ71F56 2210 aa12□□□□□ -0.49
SHMT2-232ENST00000557487 EIF4EBP3O60516 100 aaPredicted RBP12□□□□□ -0.49
SHMT2-232ENST00000557487 MSMBP08118 114 aa12□□□□□ -0.49
SHMT2-232ENST00000557487 LINC01620Q4KN68 170 aa12□□□□□ -0.49
SHMT2-232ENST00000557487 HRNRQ86YZ3 2850 aaPredicted RBP12□□□□□ -0.49
SHMT2-232ENST00000557487 IGHV3-30-3P0DP02 117 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 GATA3P23771 443 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 Q1RN00 199 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 WFDC12Q8WWY7 111 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 DCHS2Q6V1P9 2916 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 TRAV12-2A0A075B6T6 113 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 TRBV10-2A0A0K0K1G8 114 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 CD28P10747 220 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 TEX29Q8N6K0 151 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 DEFB104AQ8WTQ1 72 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 SPANXA1Q9NS26 97 aa11.99□□□□□ -0.49
SHMT2-232ENST00000557487 TRAV26-1A0A087WT03 109 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 IGHV1-58A0A0C4DH39 117 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 EDN2P20800 178 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 SPINK13Q1W4C9 94 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 Q5PR19 223 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 CITED1Q99966 193 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 SETXQ7Z333 2677 aaKnown RBP11.98□□□□□ -0.49
SHMT2-232ENST00000557487 CCL19Q99731 98 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 LITAFQ99732 161 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 YAE1D1Q9NRH1 226 aa11.98□□□□□ -0.49
SHMT2-232ENST00000557487 LRBAP50851 2863 aa11.97□□□□□ -0.49
SHMT2-232ENST00000557487 TINCRA0A1B0GVN0 87 aa11.97□□□□□ -0.49
SHMT2-232ENST00000557487 TIMM17BO60830 172 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms