RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 UBE2D3P61077 147 aa9.27□□□□□ -0.93
SHMT2-228ENST00000557302 UBE2D2P62837 147 aa9.27□□□□□ -0.93
SHMT2-228ENST00000557302 SUMO4Q6EEV6 95 aa9.27□□□□□ -0.93
SHMT2-228ENST00000557302 UQCC3Q6UW78 93 aa9.27□□□□□ -0.93
SHMT2-228ENST00000557302 KRTAP1-5Q9BYS1 174 aa9.27□□□□□ -0.93
SHMT2-228ENST00000557302 TRAV9-2A0A087WT02 112 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 J3QL48 77 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 M0QY20 66 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 RTL8CO15255 209 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 DNAH10OSP0CZ25 163 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 LINC00336Q6ZUF6 198 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 C6orf223Q8N319 242 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-228ENST00000557302 NAT8BQ9UHF3 227 aa9.26□□□□□ -0.93
SHMT2-228ENST00000557302 IGHV3-38A0A0C4DH36 116 aa9.25□□□□□ -0.93
SHMT2-228ENST00000557302 K7EP13 123 aa9.25□□□□□ -0.93
SHMT2-228ENST00000557302 PNRC1Q12796 327 aaPredicted RBP9.25□□□□□ -0.93
SHMT2-228ENST00000557302 NUP35Q8NFH5 326 aa9.25□□□□□ -0.93
SHMT2-228ENST00000557302 SMIM27A0A1W2PRY6 76 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 BTF3P20290 206 aaKnown RBP9.24□□□□□ -0.93
SHMT2-228ENST00000557302 RIGQ13278 110 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 LINC01556Q5JQF7 62 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 RASL11AQ6T310 242 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 COMMD7Q86VX2 200 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 C10orf126Q8N4M7 172 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 DNAJC30Q96LL9 226 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 TNFRSF18Q9Y5U5 241 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 DNAH17Q9UFH2 4485 aa9.24□□□□□ -0.93
SHMT2-228ENST00000557302 PPP1R2P9O14990 202 aa9.23□□□□□ -0.93
SHMT2-228ENST00000557302 SMCPP49901 116 aaPredicted RBP9.23□□□□□ -0.93
SHMT2-228ENST00000557302 DAZ4Q86SG3 579 aaKnown RBP9.23□□□□□ -0.93
SHMT2-228ENST00000557302 DAZ3Q9NR90 486 aaKnown RBP9.23□□□□□ -0.93
SHMT2-228ENST00000557302 HECTD4Q9Y4D8 3996 aa9.22□□□□□ -0.93
SHMT2-228ENST00000557302 TMEM218A2RU14 115 aa9.22□□□□□ -0.93
SHMT2-228ENST00000557302 PRSS29PA6NIE9 313 aa9.22□□□□□ -0.93
SHMT2-228ENST00000557302 TMEM191AQ9H0A3 160 aa9.22□□□□□ -0.93
SHMT2-228ENST00000557302 NIT2Q9NQR4 276 aa9.22□□□□□ -0.93
SHMT2-228ENST00000557302 FAT2Q9NYQ8 4349 aa9.22□□□□□ -0.93
SHMT2-228ENST00000557302 TRAV26-2A0A0B4J265 109 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 F8W036 122 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 IGHV3-30P01768 117 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 IGHV3-33P01772 117 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 MT-ND4LP03901 98 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 IGHV3-30-3P0DP02 117 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 IGHV3-30-5P0DP03 117 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 TMEM97Q5BJF2 176 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 GATD1Q8NB37 220 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 FRZBQ92765 325 aa9.21□□□□□ -0.94
SHMT2-228ENST00000557302 TRBV6-8A0A0A6YYG3 113 aa9.2□□□□□ -0.94
SHMT2-228ENST00000557302 ADCYAP1P18509 176 aa9.2□□□□□ -0.94
SHMT2-228ENST00000557302 S100A1P23297 94 aa9.2□□□□□ -0.94
SHMT2-228ENST00000557302 ANAPC16Q96DE5 110 aa9.2□□□□□ -0.94
SHMT2-228ENST00000557302 A0A1B0GW15 77 aa9.19□□□□□ -0.94
SHMT2-228ENST00000557302 KCNIP4Q6PIL6 250 aa9.19□□□□□ -0.94
SHMT2-228ENST00000557302 NFE4Q86UQ8 179 aa9.19□□□□□ -0.94
SHMT2-228ENST00000557302 URGCP-MRPS24S4R325 110 aa9.19□□□□□ -0.94
SHMT2-228ENST00000557302 S100A8P05109 93 aa9.18□□□□□ -0.94
SHMT2-228ENST00000557302 CAMPP49913 170 aa9.18□□□□□ -0.94
SHMT2-228ENST00000557302 NIT1Q86X76 327 aa9.18□□□□□ -0.94
SHMT2-228ENST00000557302 AMN1Q8IY45 258 aa9.18□□□□□ -0.94
SHMT2-228ENST00000557302 Q8N3U1 123 aa9.18□□□□□ -0.94
SHMT2-228ENST00000557302 SEC11CQ9BY50 192 aa9.18□□□□□ -0.94
SHMT2-228ENST00000557302 TRBV25-1A0A075B6N4 114 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 A0A087WX48 190 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 IBA57-AS1B1ANH7 110 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 ATP6V1G1O75348 118 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 RAB4AP20338 218 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 PKIAP61925 76 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 TNP2Q05952 138 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 MRPL54Q6P161 138 aaKnown RBP9.17□□□□□ -0.94
SHMT2-228ENST00000557302 NTM-AS1Q6ZSK4 140 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 RPL39LQ96EH5 51 aaKnown RBP9.17□□□□□ -0.94
SHMT2-228ENST00000557302 MRAP2Q96G30 205 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 RNF185Q96GF1 192 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 CHCHD5Q9BSY4 110 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 CHCHD7Q9BUK0 85 aa9.17□□□□□ -0.94
SHMT2-228ENST00000557302 HERC2O95714 4834 aa9.16□□□□□ -0.94
SHMT2-228ENST00000557302 IGHV1-24A0A0C4DH33 117 aa9.16□□□□□ -0.94
SHMT2-228ENST00000557302 TMEM262E9PQX1 116 aa9.16□□□□□ -0.94
SHMT2-228ENST00000557302 HBBP68871 147 aa9.16□□□□□ -0.94
SHMT2-228ENST00000557302 IQCJQ1A5X6 159 aa9.16□□□□□ -0.94
SHMT2-228ENST00000557302 LCE2AQ5TA79 106 aaPredicted RBP9.16□□□□□ -0.94
SHMT2-228ENST00000557302 Q6ZRN7 208 aaPredicted RBP9.16□□□□□ -0.94
SHMT2-228ENST00000557302 ATP5L2Q7Z4Y8 100 aa9.16□□□□□ -0.94
SHMT2-228ENST00000557302 SLC7A5P1Q8MH63 180 aa9.16□□□□□ -0.94
SHMT2-228ENST00000557302 A0A1B0GVY2 172 aa9.15□□□□□ -0.94
SHMT2-228ENST00000557302 A0A1B0GXF2 115 aa9.15□□□□□ -0.94
SHMT2-228ENST00000557302 COTL1Q14019 142 aa9.15□□□□□ -0.94
SHMT2-228ENST00000557302 LAGE3Q14657 143 aa9.15□□□□□ -0.94
SHMT2-228ENST00000557302 FAM104BQ5XKR9 115 aa9.15□□□□□ -0.94
SHMT2-228ENST00000557302 Q9HAA7 133 aa9.15□□□□□ -0.94
SHMT2-228ENST00000557302 TRBV6-5A0A0K0K1A5 114 aa9.14□□□□□ -0.95
SHMT2-228ENST00000557302 SDHAF1A6NFY7 115 aa9.14□□□□□ -0.95
SHMT2-228ENST00000557302 GAS8-AS1O95177 125 aa9.14□□□□□ -0.95
SHMT2-228ENST00000557302 ELOBQ15370 118 aa9.14□□□□□ -0.95
SHMT2-228ENST00000557302 CTDSP1Q9GZU7 261 aa9.14□□□□□ -0.95
SHMT2-228ENST00000557302 ST20Q9HBF5 79 aa9.14□□□□□ -0.95
SHMT2-228ENST00000557302 TRAV8-3A0A0A6YYJ7 113 aa9.13□□□□□ -0.95
SHMT2-228ENST00000557302 SMKR1H3BMG3 65 aa9.13□□□□□ -0.95
SHMT2-228ENST00000557302 NCR2O95944 276 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms