RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RPS10P46783 165 aaKnown RBP8.84□□□□□ -0.99
SHMT2-227ENST00000557269 MRPL51Q4U2R6 128 aaKnown RBP8.84□□□□□ -0.99
SHMT2-227ENST00000557269 RASL11AQ6T310 242 aa8.84□□□□□ -0.99
SHMT2-227ENST00000557269 LYPD5Q6UWN5 251 aa8.84□□□□□ -0.99
SHMT2-227ENST00000557269 NEGR1Q7Z3B1 354 aa8.84□□□□□ -0.99
SHMT2-227ENST00000557269 YPEL4Q96NS1 127 aa8.84□□□□□ -0.99
SHMT2-227ENST00000557269 LINC00588Q9Y4M8 146 aa8.84□□□□□ -0.99
SHMT2-227ENST00000557269 TRBV7-3A0A075B6L6 115 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 TRAV9-1A0A075B6T8 112 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 NCR2O95944 276 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 S100A8P05109 93 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 UBE2D3P61077 147 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 UBE2D2P62837 147 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 ELOBQ15370 118 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 TMEM136Q6ZRR5 245 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 CBLN2Q8IUK8 224 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 ATP6V0E2Q8NHE4 81 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 LINC00476Q8WZB0 136 aa8.83□□□□□ -1
SHMT2-227ENST00000557269 IGHV3-38A0A0C4DH36 116 aa8.82□□□□□ -1
SHMT2-227ENST00000557269 H7C1H1 209 aa8.82□□□□□ -1
SHMT2-227ENST00000557269 RPL36AP83881 106 aaKnown RBP8.82□□□□□ -1
SHMT2-227ENST00000557269 LGALS9CQ6DKI2 356 aa8.82□□□□□ -1
SHMT2-227ENST00000557269 RPL36ALQ969Q0 106 aaKnown RBP8.82□□□□□ -1
SHMT2-227ENST00000557269 NIT2Q9NQR4 276 aa8.82□□□□□ -1
SHMT2-227ENST00000557269 LY6G6CO95867 125 aa8.81□□□□□ -1
SHMT2-227ENST00000557269 NRACQ8N912 160 aa8.81□□□□□ -1
SHMT2-227ENST00000557269 DEFB104AQ8WTQ1 72 aa8.81□□□□□ -1
SHMT2-227ENST00000557269 MRAP2Q96G30 205 aa8.81□□□□□ -1
SHMT2-227ENST00000557269 DNAJC30Q96LL9 226 aa8.81□□□□□ -1
SHMT2-227ENST00000557269 TNFRSF18Q9Y5U5 241 aa8.81□□□□□ -1
SHMT2-227ENST00000557269 ALMS1Q8TCU4 4167 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 LCE6AA0A183 80 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 ATP6V1G1O75348 118 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 SCO1O75880 301 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 CCL18P55774 89 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 SH2D6Q7Z4S9 175 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 FRZBQ92765 325 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 GTSF1LQ9H1H1 148 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 SMCO4Q9NRQ5 59 aa8.8□□□□□ -1
SHMT2-227ENST00000557269 VPS13DQ5THJ4 4388 aa8.79□□□□□ -1
SHMT2-227ENST00000557269 DNAH1Q9P2D7 4330 aa8.79□□□□□ -1
SHMT2-227ENST00000557269 TRBV24-1A0A075B6N3 115 aa8.79□□□□□ -1
SHMT2-227ENST00000557269 D6R8Y8 96 aa8.79□□□□□ -1
SHMT2-227ENST00000557269 OR10J3Q5JRS4 329 aa8.79□□□□□ -1
SHMT2-227ENST00000557269 UBE2DNLQ8IWF7 75 aa8.79□□□□□ -1
SHMT2-227ENST00000557269 LYSTQ99698 3801 aa8.79□□□□□ -1
SHMT2-227ENST00000557269 MRPS16Q9Y3D3 137 aaKnown RBP8.79□□□□□ -1
SHMT2-227ENST00000557269 TRBV6-5A0A0K0K1A5 114 aa8.78□□□□□ -1
SHMT2-227ENST00000557269 CKS2P33552 79 aa8.78□□□□□ -1
SHMT2-227ENST00000557269 TIRAPP58753 221 aa8.78□□□□□ -1
SHMT2-227ENST00000557269 NTM-AS1Q6ZSK4 140 aa8.78□□□□□ -1
SHMT2-227ENST00000557269 GNB1LQ9BYB4 327 aa8.78□□□□□ -1
SHMT2-227ENST00000557269 NPYP01303 97 aa8.77□□□□□ -1.01
SHMT2-227ENST00000557269 APCSP02743 223 aa8.77□□□□□ -1.01
SHMT2-227ENST00000557269 S100A1P23297 94 aa8.77□□□□□ -1.01
SHMT2-227ENST00000557269 KIAA1644Q3SXP7 199 aa8.77□□□□□ -1.01
SHMT2-227ENST00000557269 DAZ4Q86SG3 579 aaKnown RBP8.77□□□□□ -1.01
SHMT2-227ENST00000557269 WFDC10BQ8IUB3 73 aa8.77□□□□□ -1.01
SHMT2-227ENST00000557269 ST20Q9HBF5 79 aa8.77□□□□□ -1.01
SHMT2-227ENST00000557269 DAZ3Q9NR90 486 aaKnown RBP8.77□□□□□ -1.01
SHMT2-227ENST00000557269 SDHAF1A6NFY7 115 aa8.76□□□□□ -1.01
SHMT2-227ENST00000557269 TNFRSF6BO95407 300 aa8.76□□□□□ -1.01
SHMT2-227ENST00000557269 POLR2KP53803 58 aaKnown RBP8.76□□□□□ -1.01
SHMT2-227ENST00000557269 LELP1Q5T871 98 aa8.76□□□□□ -1.01
SHMT2-227ENST00000557269 ORMDL3Q8N138 153 aa8.76□□□□□ -1.01
SHMT2-227ENST00000557269 PRELID3AQ96N28 172 aa8.76□□□□□ -1.01
SHMT2-227ENST00000557269 UPK3BQ9BT76 320 aa8.76□□□□□ -1.01
SHMT2-227ENST00000557269 TMEM70Q9BUB7 260 aa8.76□□□□□ -1.01
SHMT2-227ENST00000557269 TRBV6-8A0A0A6YYG3 113 aa8.75□□□□□ -1.01
SHMT2-227ENST00000557269 HLA-DQA1P01909 254 aa8.75□□□□□ -1.01
SHMT2-227ENST00000557269 PPBPP02775 128 aa8.75□□□□□ -1.01
SHMT2-227ENST00000557269 MRPL18Q9H0U6 180 aaKnown RBP8.75□□□□□ -1.01
SHMT2-227ENST00000557269 IGLV2-18A0A075B6J9 118 aa8.74□□□□□ -1.01
SHMT2-227ENST00000557269 COLCA2A8K830 154 aa8.74□□□□□ -1.01
SHMT2-227ENST00000557269 SUMO2P61956 95 aaKnown RBP8.74□□□□□ -1.01
SHMT2-227ENST00000557269 COX19Q49B96 90 aa8.74□□□□□ -1.01
SHMT2-227ENST00000557269 Q8N3U1 123 aa8.74□□□□□ -1.01
SHMT2-227ENST00000557269 Q9H8V8 135 aa8.74□□□□□ -1.01
SHMT2-227ENST00000557269 SACSQ9NZJ4 4579 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 TRBV27A0A0K0K1C4 114 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 I3L3M4 83 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 PPP1R17O96001 155 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 TSHBP01222 138 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 MT-ND6P03923 174 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 PMCHP20382 165 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 FABP9Q0Z7S8 132 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 C20orf78Q9BR46 151 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 TRAPPC1Q9Y5R8 145 aa8.73□□□□□ -1.01
SHMT2-227ENST00000557269 KMT2CQ8NEZ4 4911 aaKnown RBP8.73□□□□□ -1.01
SHMT2-227ENST00000557269 TRAV8-6A0A0B4J262 113 aa8.72□□□□□ -1.01
SHMT2-227ENST00000557269 VCYO14598 125 aa8.72□□□□□ -1.01
SHMT2-227ENST00000557269 PHOX2AO14813 284 aa8.72□□□□□ -1.01
SHMT2-227ENST00000557269 SIVA1O15304 175 aa8.72□□□□□ -1.01
SHMT2-227ENST00000557269 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-227ENST00000557269 ALKBH7Q9BT30 221 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-227ENST00000557269 KRTAP1-5Q9BYS1 174 aa8.72□□□□□ -1.01
SHMT2-227ENST00000557269 HYDINQ4G0P3 5121 aa8.72□□□□□ -1.01
SHMT2-227ENST00000557269 LOC389332A0A1B0GUA5 103 aa8.71□□□□□ -1.02
SHMT2-227ENST00000557269 M0R2N4 97 aa8.71□□□□□ -1.02
SHMT2-227ENST00000557269 DNAH10OSP0CZ25 163 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms