RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 LRCOL1A6NCL2 159 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 A8MWV9 139 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 K7EN84 100 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 BCL2P10415 239 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 EVI2AP22794 236 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 ZNF56Q15929 161 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 LINC01620Q4KN68 170 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 LINC01556Q5JQF7 62 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 LELP1Q5T871 98 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 ZFP2Q6ZN57 461 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 GTSF1LQ9H1H1 148 aa4.25□□□□□ -1.73
TMEM260-209ENST00000556079 C19orf71A6NCJ1 209 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 EPM2AB3EWF7 344 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 SNAI2O43623 268 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 BTF3P20290 206 aaKnown RBP4.24□□□□□ -1.73
TMEM260-209ENST00000556079 MALP21145 153 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 TIRAPP58753 221 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 ERVFC1-1P60608 527 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 SLC51BQ86UW2 128 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 ZFP82Q8N141 532 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 NEXN-AS1Q8NBZ9 246 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 OR2D3Q8NGH3 330 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 MANBALQ9NQG1 85 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 MED9Q9NWA0 146 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 KIF25-AS1Q9Y6Z4 181 aa4.24□□□□□ -1.73
TMEM260-209ENST00000556079 TRAV8-6A0A0B4J262 113 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 IBA57-AS1B1ANH7 110 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 TNFRSF6BO95407 300 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 PLA2G1BP04054 148 aaKnown RBP4.23□□□□□ -1.73
TMEM260-209ENST00000556079 MGPP08493 103 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 IGLC6P0CF74 106 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 INAFM2P0DMQ5 153 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 CEBPGP53567 150 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 FOXA3P55318 350 aaPredicted RBP4.23□□□□□ -1.73
TMEM260-209ENST00000556079 XGP55808 180 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 UBE2D3P61077 147 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 UBE2D2P62837 147 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 EIF5AP63241 154 aaKnown RBP4.23□□□□□ -1.73
TMEM260-209ENST00000556079 MEF2BQ02080 365 aaPredicted RBP4.23□□□□□ -1.73
TMEM260-209ENST00000556079 NTM-AS1Q6ZSK4 140 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 TCEAL7Q9BRU2 100 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 RNASE7Q9H1E1 156 aaKnown RBP4.23□□□□□ -1.73
TMEM260-209ENST00000556079 FAM30AQ9NZY2 134 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 PKHD1L1Q86WI1 4243 aa4.23□□□□□ -1.73
TMEM260-209ENST00000556079 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.22□□□□□ -1.73
TMEM260-209ENST00000556079 TRAV26-2A0A0B4J265 109 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 F5H697 171 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 RHODO00212 210 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 SMR3BP02814 79 aaPredicted RBP4.22□□□□□ -1.73
TMEM260-209ENST00000556079 GNG4P50150 75 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 RAB5CP51148 216 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 SPANXN1Q5VSR9 72 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 SUMO4Q6EEV6 95 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 CLPSL2Q6UWE3 100 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 LYZL1Q6UWQ5 148 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 SH2D6Q7Z4S9 175 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 NIT1Q86X76 327 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 FER1L6-AS1Q8NA97 138 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 NUDT10Q8NFP7 164 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 OCC1Q8TAD7 63 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 BAALCQ8WXS3 180 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 NUDT11Q96G61 164 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 KRTAP4-11Q9BYQ6 195 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 KLK12Q9UKR0 248 aa4.22□□□□□ -1.73
TMEM260-209ENST00000556079 TRAV9-2A0A087WT02 112 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 C9JQL5 133 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 PSCAO43653 123 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 GAS8-AS1O95177 125 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 S100A9P06702 114 aaKnown RBP4.21□□□□□ -1.74
TMEM260-209ENST00000556079 CXCL1P09341 107 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 OR5AL1P0C617 328 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 GAGE6Q13070 117 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 MPV17L2Q567V2 206 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 PIK3CD-AS1Q5SR53 167 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 LCE5AQ5TCM9 118 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 Q5VSD8 79 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 NFE4Q86UQ8 179 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 Q8N976 141 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 GTSF1Q8WW33 167 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 UBE2WQ96B02 151 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 GFRA4Q9GZZ7 299 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 VAX2Q9UIW0 290 aa4.21□□□□□ -1.74
TMEM260-209ENST00000556079 IGLV5-52A0A0A0MRZ9 124 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 CIDEAO60543 219 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 IFNA1P01562 189 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 P01737 135 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 RAB4BP61018 213 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 RPL36AP83881 106 aaKnown RBP4.2□□□□□ -1.74
TMEM260-209ENST00000556079 EIF5AL1Q6IS14 154 aaKnown RBP4.2□□□□□ -1.74
TMEM260-209ENST00000556079 ENHOQ6UWT2 76 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 C10orf126Q8N4M7 172 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 Q8N814 137 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 C15orf54Q8N8G6 183 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 OR10G8Q8NGN5 311 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 NTN5Q8WTR8 489 aaPredicted RBP4.2□□□□□ -1.74
TMEM260-209ENST00000556079 RPL36ALQ969Q0 106 aaKnown RBP4.2□□□□□ -1.74
TMEM260-209ENST00000556079 AP1S3Q96PC3 154 aa4.2□□□□□ -1.74
TMEM260-209ENST00000556079 TRBV7-3A0A075B6L6 115 aa4.19□□□□□ -1.74
TMEM260-209ENST00000556079 IGKV2D-24A0A075B6R9 120 aa4.19□□□□□ -1.74
TMEM260-209ENST00000556079 TRBV6-8A0A0A6YYG3 113 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms