RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 CNFNQ9BYD5 112 aa13.9□□□□□ -0.18
CCDC88C-210ENST00000555995 DPH3P1Q9H4G8 78 aa13.9□□□□□ -0.18
CCDC88C-210ENST00000555995 TNFRSF18Q9Y5U5 241 aa13.9□□□□□ -0.18
CCDC88C-210ENST00000555995 GATCO43716 136 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 ELOBQ15370 118 aa13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 CT83Q5H943 113 aa13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 TEX261Q6UWH6 196 aa13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 DAZ4Q86SG3 579 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 DNAJC30Q96LL9 226 aa13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 DAZ3Q9NR90 486 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 PGPEP1Q9NXJ5 209 aa13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 DYNC1H1Q14204 4646 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-210ENST00000555995 A0A087WX48 190 aa13.88□□□□□ -0.19
CCDC88C-210ENST00000555995 A8MWL6 223 aa13.88□□□□□ -0.19
CCDC88C-210ENST00000555995 NIT1Q86X76 327 aa13.88□□□□□ -0.19
CCDC88C-210ENST00000555995 Q9HAA7 133 aa13.88□□□□□ -0.19
CCDC88C-210ENST00000555995 A0A087WTM6 91 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 TRBV6-8A0A0A6YYG3 113 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 ZNF727A8MUV8 499 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 NTF3P20783 257 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 FAM74A3Q4VXF1 159 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 SMIM15Q7Z3B0 74 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 RMI2Q96E14 147 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 COX11Q9Y6N1 276 aa13.87□□□□□ -0.19
CCDC88C-210ENST00000555995 SRP19P09132 144 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-210ENST00000555995 TWIST1Q15672 202 aa13.85□□□□□ -0.19
CCDC88C-210ENST00000555995 BORCS7Q96B45 105 aa13.85□□□□□ -0.19
CCDC88C-210ENST00000555995 SMDT1Q9H4I9 107 aa13.85□□□□□ -0.19
CCDC88C-210ENST00000555995 HERC2O95714 4834 aa13.85□□□□□ -0.19
CCDC88C-210ENST00000555995 KIAA1109Q2LD37 5005 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 M0QY20 66 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 CDK2AP2O75956 126 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 KRTAP10-2P60368 255 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 SUMO4Q6EEV6 95 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 RASL11AQ6T310 242 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 LINC01551Q86U37 167 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 FRZBQ92765 325 aa13.84□□□□□ -0.19
CCDC88C-210ENST00000555995 PEA15Q15121 130 aa13.83□□□□□ -0.2
CCDC88C-210ENST00000555995 C15orf54Q8N8G6 183 aa13.83□□□□□ -0.2
CCDC88C-210ENST00000555995 TRBV25-1A0A075B6N4 114 aa13.82□□□□□ -0.2
CCDC88C-210ENST00000555995 FAM231BA6NCW3 169 aa13.82□□□□□ -0.2
CCDC88C-210ENST00000555995 GFRA4Q9GZZ7 299 aa13.82□□□□□ -0.2
CCDC88C-210ENST00000555995 OSTCQ9NRP0 149 aa13.82□□□□□ -0.2
CCDC88C-210ENST00000555995 NTN5Q8WTR8 489 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-210ENST00000555995 GTSF1Q8WW33 167 aa13.81□□□□□ -0.2
CCDC88C-210ENST00000555995 CHCHD5Q9BSY4 110 aa13.81□□□□□ -0.2
CCDC88C-210ENST00000555995 NIT2Q9NQR4 276 aa13.81□□□□□ -0.2
CCDC88C-210ENST00000555995 TMEM262E9PQX1 116 aa13.8□□□□□ -0.2
CCDC88C-210ENST00000555995 FOXA3P55318 350 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-210ENST00000555995 Q0VG73 95 aa13.8□□□□□ -0.2
CCDC88C-210ENST00000555995 Q8N3U1 123 aa13.8□□□□□ -0.2
CCDC88C-210ENST00000555995 TSKUQ8WUA8 353 aa13.8□□□□□ -0.2
CCDC88C-210ENST00000555995 TMEM241Q24JQ0 296 aa13.79□□□□□ -0.2
CCDC88C-210ENST00000555995 KLK12Q9UKR0 248 aa13.79□□□□□ -0.2
CCDC88C-210ENST00000555995 IGHV1-24A0A0C4DH33 117 aa13.78□□□□□ -0.2
CCDC88C-210ENST00000555995 LRCOL1A6NCL2 159 aa13.78□□□□□ -0.2
CCDC88C-210ENST00000555995 CRPP02741 224 aa13.78□□□□□ -0.2
CCDC88C-210ENST00000555995 IQCJQ1A5X6 159 aa13.78□□□□□ -0.2
CCDC88C-210ENST00000555995 PGLYRP4Q96LB8 373 aa13.78□□□□□ -0.2
CCDC88C-210ENST00000555995 NAT8Q9UHE5 227 aa13.78□□□□□ -0.2
CCDC88C-210ENST00000555995 HIGD1CA8MV81 97 aa13.76□□□□□ -0.21
CCDC88C-210ENST00000555995 UBE2WQ96B02 151 aa13.76□□□□□ -0.21
CCDC88C-210ENST00000555995 A0A1B0GUT8 65 aa13.75□□□□□ -0.21
CCDC88C-210ENST00000555995 MPV17L2Q567V2 206 aa13.75□□□□□ -0.21
CCDC88C-210ENST00000555995 Q8N814 137 aa13.75□□□□□ -0.21
CCDC88C-210ENST00000555995 ISOC2Q96AB3 205 aa13.75□□□□□ -0.21
CCDC88C-210ENST00000555995 RYR1P21817 5038 aa13.75□□□□□ -0.21
CCDC88C-210ENST00000555995 IGKV2D-24A0A075B6R9 120 aa13.74□□□□□ -0.21
CCDC88C-210ENST00000555995 ANGP03950 147 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-210ENST00000555995 RAB14P61106 215 aa13.74□□□□□ -0.21
CCDC88C-210ENST00000555995 COTL1Q14019 142 aa13.74□□□□□ -0.21
CCDC88C-210ENST00000555995 ADIRFQ15847 76 aa13.74□□□□□ -0.21
CCDC88C-210ENST00000555995 ATRAIDQ6UW56 229 aa13.74□□□□□ -0.21
CCDC88C-210ENST00000555995 NTM-AS1Q6ZSK4 140 aa13.74□□□□□ -0.21
CCDC88C-210ENST00000555995 LRP1BQ9NZR2 4599 aa13.73□□□□□ -0.21
CCDC88C-210ENST00000555995 IGLV5-52A0A0A0MRZ9 124 aa13.73□□□□□ -0.21
CCDC88C-210ENST00000555995 RPL23P62829 140 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-210ENST00000555995 TMEM243Q9BU79 118 aa13.73□□□□□ -0.21
CCDC88C-210ENST00000555995 C1orf43Q9BWL3 253 aa13.73□□□□□ -0.21
CCDC88C-210ENST00000555995 V9GYV3 84 aa13.73□□□□□ -0.21
CCDC88C-210ENST00000555995 GATD1Q8NB37 220 aa13.72□□□□□ -0.21
CCDC88C-210ENST00000555995 GCSHP23434 173 aa13.71□□□□□ -0.21
CCDC88C-210ENST00000555995 RIGQ13278 110 aa13.71□□□□□ -0.21
CCDC88C-210ENST00000555995 MIAQ16674 131 aa13.71□□□□□ -0.21
CCDC88C-210ENST00000555995 TMEM191AQ9H0A3 160 aa13.71□□□□□ -0.21
CCDC88C-210ENST00000555995 NAT8BQ9UHF3 227 aa13.71□□□□□ -0.21
CCDC88C-210ENST00000555995 DNAH5Q8TE73 4624 aa13.71□□□□□ -0.22
CCDC88C-210ENST00000555995 UBE2L6O14933 153 aa13.7□□□□□ -0.22
CCDC88C-210ENST00000555995 GAGE6Q13070 117 aa13.7□□□□□ -0.22
CCDC88C-210ENST00000555995 TRAV26-2A0A0B4J265 109 aa13.69□□□□□ -0.22
CCDC88C-210ENST00000555995 C9JQL5 133 aa13.69□□□□□ -0.22
CCDC88C-210ENST00000555995 NCR2O95944 276 aa13.69□□□□□ -0.22
CCDC88C-210ENST00000555995 AMTP48728 403 aa13.69□□□□□ -0.22
CCDC88C-210ENST00000555995 RBX1P62877 108 aa13.69□□□□□ -0.22
CCDC88C-210ENST00000555995 SRSF3P84103 164 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-210ENST00000555995 Q8N976 141 aa13.69□□□□□ -0.22
CCDC88C-210ENST00000555995 A0A1B0GUV1 79 aa13.68□□□□□ -0.22
CCDC88C-210ENST00000555995 C14orf177Q52M58 125 aa13.68□□□□□ -0.22
CCDC88C-210ENST00000555995 ENHOQ6UWT2 76 aa13.67□□□□□ -0.22
CCDC88C-210ENST00000555995 NUP35Q8NFH5 326 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms