RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KRTAP17-1Q9BYP8 105 aa7.76□□□□□ -1.17
CCDC88C-208ENST00000554165 PCLOQ9Y6V0 5065 aa7.76□□□□□ -1.17
CCDC88C-208ENST00000554165 A0A087WTM6 91 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 F2Z2F3 143 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 K7EP13 123 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 M0QY20 66 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 GATCO43716 136 aaKnown RBP7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 SMIM17P0DL12 118 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 CTRLP40313 264 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 CACNG7P62955 275 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 SUMO4Q6EEV6 95 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 DEFB104AQ8WTQ1 72 aa7.75□□□□□ -1.17
CCDC88C-208ENST00000554165 A0A087WWC5 75 aa7.74□□□□□ -1.17
CCDC88C-208ENST00000554165 ZNF727A8MUV8 499 aa7.74□□□□□ -1.17
CCDC88C-208ENST00000554165 NTM-AS1Q6ZSK4 140 aa7.74□□□□□ -1.17
CCDC88C-208ENST00000554165 LINC01551Q86U37 167 aa7.74□□□□□ -1.17
CCDC88C-208ENST00000554165 NIT1Q86X76 327 aa7.74□□□□□ -1.17
CCDC88C-208ENST00000554165 PGLYRP4Q96LB8 373 aa7.74□□□□□ -1.17
CCDC88C-208ENST00000554165 DNAH5Q8TE73 4624 aa7.74□□□□□ -1.17
CCDC88C-208ENST00000554165 LRCOL1A6NCL2 159 aa7.73□□□□□ -1.17
CCDC88C-208ENST00000554165 ERVFC1-1P60608 527 aa7.73□□□□□ -1.17
CCDC88C-208ENST00000554165 TWIST1Q15672 202 aa7.73□□□□□ -1.17
CCDC88C-208ENST00000554165 FAM231DQ6ZW35 169 aa7.73□□□□□ -1.17
CCDC88C-208ENST00000554165 TRBV6-8A0A0A6YYG3 113 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 TRAV26-2A0A0B4J265 109 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 WFDC2Q14508 124 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 WDR73Q6P4I2 378 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 MAPKAPK5-AS1Q8N8E1 139 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 CNFNQ9BYD5 112 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 KLK12Q9UKR0 248 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 HSPG2P98160 4391 aa7.72□□□□□ -1.17
CCDC88C-208ENST00000554165 PSCAO43653 123 aa7.71□□□□□ -1.18
CCDC88C-208ENST00000554165 TRGC1P0CF51 173 aa7.71□□□□□ -1.18
CCDC88C-208ENST00000554165 DPH3P1Q9H4G8 78 aa7.71□□□□□ -1.18
CCDC88C-208ENST00000554165 A8MWL6 223 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 TMEM262E9PQX1 116 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 LECT2O14960 151 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 NDUFS6O75380 124 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 LAGE3Q14657 143 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 TMEM241Q24JQ0 296 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 MPV17L2Q567V2 206 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 RASL11AQ6T310 242 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 GATD1Q8NB37 220 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 CHCHD5Q9BSY4 110 aa7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 APOBP04114 4563 aaKnown RBP7.7□□□□□ -1.18
CCDC88C-208ENST00000554165 A0A087WX48 190 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 EREGO14944 169 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 GAS8-AS1O95177 125 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 RPL23P62829 140 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 GAGE6Q13070 117 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 Q8N976 141 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 ISOC2Q96AB3 205 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 UBE2WQ96B02 151 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 RPL39LQ96EH5 51 aaKnown RBP7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 KRTAP4-5Q9BYR2 181 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 OSTCQ9NRP0 149 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 URGCP-MRPS24S4R325 110 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 V9GYV3 84 aa7.69□□□□□ -1.18
CCDC88C-208ENST00000554165 ABCA13Q86UQ4 5058 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 HIGD1CA8MV81 97 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 H7C1H1 209 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 KRTAP10-1P60331 282 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 PEA15Q15121 130 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 ADIRFQ15847 76 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 CT83Q5H943 113 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 ENHOQ6UWT2 76 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 C15orf54Q8N8G6 183 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 TSKUQ8WUA8 353 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 NIT2Q9NQR4 276 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 PGPEP1Q9NXJ5 209 aa7.68□□□□□ -1.18
CCDC88C-208ENST00000554165 TRAV8-3A0A0A6YYJ7 113 aa7.67□□□□□ -1.18
CCDC88C-208ENST00000554165 ATRAIDQ6UW56 229 aa7.67□□□□□ -1.18
CCDC88C-208ENST00000554165 BAALCQ8WXS3 180 aa7.67□□□□□ -1.18
CCDC88C-208ENST00000554165 IGKV2D-24A0A075B6R9 120 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 ANGP03950 147 aaKnown RBP7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 RBX1P62877 108 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 IQCJQ1A5X6 159 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 FAM74A3Q4VXF1 159 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 CLPSL2Q6UWE3 100 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 Q8N814 137 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 TM2D2Q9BX73 214 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 NAT8Q9UHE5 227 aa7.66□□□□□ -1.18
CCDC88C-208ENST00000554165 TRBV25-1A0A075B6N4 114 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 IGHV1-24A0A0C4DH33 117 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 A0A1B0GUT8 65 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 CDK2AP2O75956 126 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 NUP35Q8NFH5 326 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 RNF185Q96GF1 192 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 CHCHD7Q9BUK0 85 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 GFRA4Q9GZZ7 299 aa7.65□□□□□ -1.18
CCDC88C-208ENST00000554165 IGLV4-60A0A075B6I1 120 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 HAMPP81172 84 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 TMEM97Q5BJF2 176 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 CDPF1Q6NVV7 123 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 KCNIP4Q6PIL6 250 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 SMIM15Q7Z3B0 74 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 AMN1Q8IY45 258 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 TMEM243Q9BU79 118 aa7.64□□□□□ -1.19
CCDC88C-208ENST00000554165 IGLV5-52A0A0A0MRZ9 124 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms