RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 ZNF56Q15929 161 aa12.86□□□□□ -0.35
PTCH1-227ENST00000553256 DAZ4Q86SG3 579 aaKnown RBP12.86□□□□□ -0.35
PTCH1-227ENST00000553256 RPP21Q9H633 154 aaKnown RBP12.86□□□□□ -0.35
PTCH1-227ENST00000553256 DAZ3Q9NR90 486 aaKnown RBP12.86□□□□□ -0.35
PTCH1-227ENST00000553256 ERVFC1-1P60608 527 aa12.85□□□□□ -0.35
PTCH1-227ENST00000553256 NTM-AS1Q6ZSK4 140 aa12.85□□□□□ -0.35
PTCH1-227ENST00000553256 XKRY2A2RUG3 117 aa12.84□□□□□ -0.35
PTCH1-227ENST00000553256 FUSP35637 526 aaKnown RBP eCLIP12.84□□□□□ -0.35
PTCH1-227ENST00000553256 TPPP3Q9BW30 176 aa12.84□□□□□ -0.35
PTCH1-227ENST00000553256 TRBV6-8A0A0A6YYG3 113 aa12.83□□□□□ -0.36
PTCH1-227ENST00000553256 C9JQL5 133 aa12.83□□□□□ -0.36
PTCH1-227ENST00000553256 NTF3P20783 257 aa12.83□□□□□ -0.36
PTCH1-227ENST00000553256 FOXA3P55318 350 aaPredicted RBP12.83□□□□□ -0.36
PTCH1-227ENST00000553256 SUMO4Q6EEV6 95 aa12.83□□□□□ -0.36
PTCH1-227ENST00000553256 TEX261Q6UWH6 196 aa12.83□□□□□ -0.36
PTCH1-227ENST00000553256 DNAJC30Q96LL9 226 aa12.83□□□□□ -0.36
PTCH1-227ENST00000553256 PGPEP1Q9NXJ5 209 aa12.83□□□□□ -0.36
PTCH1-227ENST00000553256 LINC01551Q86U37 167 aa12.82□□□□□ -0.36
PTCH1-227ENST00000553256 MAPKAPK5-AS1Q8N8E1 139 aa12.82□□□□□ -0.36
PTCH1-227ENST00000553256 CHCHD7Q9BUK0 85 aa12.82□□□□□ -0.36
PTCH1-227ENST00000553256 CT83Q5H943 113 aa12.81□□□□□ -0.36
PTCH1-227ENST00000553256 CDPF1Q6NVV7 123 aa12.81□□□□□ -0.36
PTCH1-227ENST00000553256 KRTAP4-5Q9BYR2 181 aa12.81□□□□□ -0.36
PTCH1-227ENST00000553256 F5H697 171 aa12.8□□□□□ -0.36
PTCH1-227ENST00000553256 WFDC2Q14508 124 aa12.8□□□□□ -0.36
PTCH1-227ENST00000553256 EIF5A2Q9GZV4 153 aaKnown RBP12.8□□□□□ -0.36
PTCH1-227ENST00000553256 Q9HAA7 133 aa12.8□□□□□ -0.36
PTCH1-227ENST00000553256 SMIM17P0DL12 118 aa12.79□□□□□ -0.36
PTCH1-227ENST00000553256 SRSF3P84103 164 aaKnown RBP12.79□□□□□ -0.36
PTCH1-227ENST00000553256 ATRAIDQ6UW56 229 aa12.79□□□□□ -0.36
PTCH1-227ENST00000553256 SMIM7Q9BQ49 75 aa12.79□□□□□ -0.36
PTCH1-227ENST00000553256 DPH3P1Q9H4G8 78 aa12.79□□□□□ -0.36
PTCH1-227ENST00000553256 TRGC1P0CF51 173 aa12.78□□□□□ -0.36
PTCH1-227ENST00000553256 TRAV8-3A0A0A6YYJ7 113 aa12.77□□□□□ -0.37
PTCH1-227ENST00000553256 GATCO43716 136 aaKnown RBP12.77□□□□□ -0.37
PTCH1-227ENST00000553256 ZNF727A8MUV8 499 aa12.76□□□□□ -0.37
PTCH1-227ENST00000553256 MGPP08493 103 aa12.76□□□□□ -0.37
PTCH1-227ENST00000553256 CEBPGP53567 150 aa12.76□□□□□ -0.37
PTCH1-227ENST00000553256 KRTAP10-1P60331 282 aa12.76□□□□□ -0.37
PTCH1-227ENST00000553256 IQCJQ1A5X6 159 aa12.76□□□□□ -0.37
PTCH1-227ENST00000553256 OSTCQ9NRP0 149 aa12.76□□□□□ -0.37
PTCH1-227ENST00000553256 A8MWL6 223 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 EREGO14944 169 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 TWIST1Q15672 202 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 MPV17L2Q567V2 206 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 RASL11AQ6T310 242 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 ENHOQ6UWT2 76 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 Q8N814 137 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 GATD1Q8NB37 220 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 KLK12Q9UKR0 248 aa12.75□□□□□ -0.37
PTCH1-227ENST00000553256 H7C1H1 209 aa12.74□□□□□ -0.37
PTCH1-227ENST00000553256 TM2D2Q9BX73 214 aa12.74□□□□□ -0.37
PTCH1-227ENST00000553256 NIT2Q9NQR4 276 aa12.74□□□□□ -0.37
PTCH1-227ENST00000553256 V9GYV3 84 aa12.74□□□□□ -0.37
PTCH1-227ENST00000553256 VPS13BQ7Z7G8 4022 aa12.73□□□□□ -0.37
PTCH1-227ENST00000553256 FAM231BA6NCW3 169 aa12.73□□□□□ -0.37
PTCH1-227ENST00000553256 XGP55808 180 aa12.73□□□□□ -0.37
PTCH1-227ENST00000553256 TMEM97Q5BJF2 176 aa12.73□□□□□ -0.37
PTCH1-227ENST00000553256 TSKUQ8WUA8 353 aa12.73□□□□□ -0.37
PTCH1-227ENST00000553256 ISOC2Q96AB3 205 aa12.73□□□□□ -0.37
PTCH1-227ENST00000553256 GFRA4Q9GZZ7 299 aa12.73□□□□□ -0.37
PTCH1-227ENST00000553256 A0A087WX48 190 aa12.72□□□□□ -0.37
PTCH1-227ENST00000553256 PSCAO43653 123 aa12.72□□□□□ -0.37
PTCH1-227ENST00000553256 RPL23P62829 140 aaKnown RBP12.72□□□□□ -0.37
PTCH1-227ENST00000553256 FAM74A3Q4VXF1 159 aa12.72□□□□□ -0.37
PTCH1-227ENST00000553256 NTN5Q8WTR8 489 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-227ENST00000553256 FRZBQ92765 325 aa12.72□□□□□ -0.37
PTCH1-227ENST00000553256 PGLYRP4Q96LB8 373 aa12.72□□□□□ -0.37
PTCH1-227ENST00000553256 SMDT1Q9H4I9 107 aa12.72□□□□□ -0.37
PTCH1-227ENST00000553256 PRR34Q9NV39 138 aa12.72□□□□□ -0.37
PTCH1-227ENST00000553256 Q8N976 141 aa12.71□□□□□ -0.37
PTCH1-227ENST00000553256 URGCP-MRPS24S4R325 110 aa12.71□□□□□ -0.37
PTCH1-227ENST00000553256 TRAV26-2A0A0B4J265 109 aa12.7□□□□□ -0.38
PTCH1-227ENST00000553256 RBX1P62877 108 aa12.7□□□□□ -0.38
PTCH1-227ENST00000553256 ELOBQ15370 118 aa12.7□□□□□ -0.38
PTCH1-227ENST00000553256 TMEM241Q24JQ0 296 aa12.7□□□□□ -0.38
PTCH1-227ENST00000553256 KRTAP26-1Q6PEX3 210 aa12.7□□□□□ -0.38
PTCH1-227ENST00000553256 UBE2WQ96B02 151 aa12.7□□□□□ -0.38
PTCH1-227ENST00000553256 HIGD1CA8MV81 97 aa12.69□□□□□ -0.38
PTCH1-227ENST00000553256 GAS8-AS1O95177 125 aa12.69□□□□□ -0.38
PTCH1-227ENST00000553256 CHCHD5Q9BSY4 110 aa12.69□□□□□ -0.38
PTCH1-227ENST00000553256 COX11Q9Y6N1 276 aa12.69□□□□□ -0.38
PTCH1-227ENST00000553256 TRBV25-1A0A075B6N4 114 aa12.68□□□□□ -0.38
PTCH1-227ENST00000553256 IGHV1-24A0A0C4DH33 117 aa12.68□□□□□ -0.38
PTCH1-227ENST00000553256 TMEM262E9PQX1 116 aa12.68□□□□□ -0.38
PTCH1-227ENST00000553256 RNF185Q96GF1 192 aa12.68□□□□□ -0.38
PTCH1-227ENST00000553256 GCSHP23434 173 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 PKIAP61925 76 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 GAGE6Q13070 117 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 PEA15Q15121 130 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 Q8N1X5 172 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 C15orf54Q8N8G6 183 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-227ENST00000553256 BAALCQ8WXS3 180 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 RPL39LQ96EH5 51 aaKnown RBP12.67□□□□□ -0.38
PTCH1-227ENST00000553256 NAT8Q9UHE5 227 aa12.67□□□□□ -0.38
PTCH1-227ENST00000553256 TRBV6-5A0A0K0K1A5 114 aa12.66□□□□□ -0.38
PTCH1-227ENST00000553256 A0A1B0GUT8 65 aa12.66□□□□□ -0.38
PTCH1-227ENST00000553256 A0A1B0GUV1 79 aa12.66□□□□□ -0.38
PTCH1-227ENST00000553256 Q0VG73 95 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms