RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 GAS8-AS1O95177 125 aa14.66□□□□□ -0.06
VPS29-206ENST00000549578 RPL36AP83881 106 aaKnown RBP14.66□□□□□ -0.06
VPS29-206ENST00000549578 RPL36ALQ969Q0 106 aaKnown RBP14.66□□□□□ -0.06
VPS29-206ENST00000549578 ELOBQ15370 118 aa14.66□□□□□ -0.06
VPS29-206ENST00000549578 CBLN2Q8IUK8 224 aa14.66□□□□□ -0.06
VPS29-206ENST00000549578 TRBV7-3A0A075B6L6 115 aa14.65□□□□□ -0.06
VPS29-206ENST00000549578 TGIF2-C20orf24A0A0A6YYL0 155 aa14.65□□□□□ -0.06
VPS29-206ENST00000549578 SMKR1H3BMG3 65 aa14.65□□□□□ -0.06
VPS29-206ENST00000549578 NCR2O95944 276 aa14.65□□□□□ -0.06
VPS29-206ENST00000549578 ESRGQ1W209 222 aa14.65□□□□□ -0.06
VPS29-206ENST00000549578 MRPL51Q4U2R6 128 aaKnown RBP14.65□□□□□ -0.06
VPS29-206ENST00000549578 RPL39LQ96EH5 51 aaKnown RBP14.65□□□□□ -0.06
VPS29-206ENST00000549578 ATP6V0E2Q8NHE4 81 aa14.64□□□□□ -0.07
VPS29-206ENST00000549578 MRAP2Q96G30 205 aa14.64□□□□□ -0.07
VPS29-206ENST00000549578 NIT2Q9NQR4 276 aa14.64□□□□□ -0.07
VPS29-206ENST00000549578 ATP6V1G1O75348 118 aa14.63□□□□□ -0.07
VPS29-206ENST00000549578 UBE2D3P61077 147 aa14.63□□□□□ -0.07
VPS29-206ENST00000549578 UBE2D2P62837 147 aa14.63□□□□□ -0.07
VPS29-206ENST00000549578 TMEM136Q6ZRR5 245 aa14.63□□□□□ -0.07
VPS29-206ENST00000549578 SH2D6Q7Z4S9 175 aa14.63□□□□□ -0.07
VPS29-206ENST00000549578 TNFRSF18Q9Y5U5 241 aa14.63□□□□□ -0.07
VPS29-206ENST00000549578 RPS10P46783 165 aaKnown RBP14.62□□□□□ -0.07
VPS29-206ENST00000549578 CCL18P55774 89 aa14.62□□□□□ -0.07
VPS29-206ENST00000549578 LYPD5Q6UWN5 251 aa14.62□□□□□ -0.07
VPS29-206ENST00000549578 DNAJC30Q96LL9 226 aa14.62□□□□□ -0.07
VPS29-206ENST00000549578 SMCO4Q9NRQ5 59 aa14.62□□□□□ -0.07
VPS29-206ENST00000549578 LINC00588Q9Y4M8 146 aa14.62□□□□□ -0.07
VPS29-206ENST00000549578 UBE2DNLQ8IWF7 75 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 LINC00476Q8WZB0 136 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 FRZBQ92765 325 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 YPEL4Q96NS1 127 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 ALMS1Q8TCU4 4167 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 IGHV3-38A0A0C4DH36 116 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 LY6G6CO95867 125 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 LGALS9CQ6DKI2 356 aa14.61□□□□□ -0.07
VPS29-206ENST00000549578 TRBV24-1A0A075B6N3 115 aa14.6□□□□□ -0.07
VPS29-206ENST00000549578 CKS2P33552 79 aa14.6□□□□□ -0.07
VPS29-206ENST00000549578 OR10J3Q5JRS4 329 aa14.6□□□□□ -0.07
VPS29-206ENST00000549578 GTSF1LQ9H1H1 148 aa14.6□□□□□ -0.07
VPS29-206ENST00000549578 D6R8Y8 96 aa14.59□□□□□ -0.07
VPS29-206ENST00000549578 VPS13DQ5THJ4 4388 aa14.59□□□□□ -0.07
VPS29-206ENST00000549578 SCO1O75880 301 aa14.58□□□□□ -0.08
VPS29-206ENST00000549578 NRACQ8N912 160 aa14.58□□□□□ -0.08
VPS29-206ENST00000549578 GNB1LQ9BYB4 327 aa14.58□□□□□ -0.08
VPS29-206ENST00000549578 DNAH1Q9P2D7 4330 aa14.58□□□□□ -0.08
VPS29-206ENST00000549578 TRBV6-5A0A0K0K1A5 114 aa14.56□□□□□ -0.08
VPS29-206ENST00000549578 HLA-DQA1P01909 254 aa14.56□□□□□ -0.08
VPS29-206ENST00000549578 DAZ4Q86SG3 579 aaKnown RBP14.56□□□□□ -0.08
VPS29-206ENST00000549578 DAZ3Q9NR90 486 aaKnown RBP14.56□□□□□ -0.08
VPS29-206ENST00000549578 MRPS16Q9Y3D3 137 aaKnown RBP14.56□□□□□ -0.08
VPS29-206ENST00000549578 S100A1P23297 94 aa14.56□□□□□ -0.08
VPS29-206ENST00000549578 TIRAPP58753 221 aa14.56□□□□□ -0.08
VPS29-206ENST00000549578 COX19Q49B96 90 aa14.56□□□□□ -0.08
VPS29-206ENST00000549578 ORMDL3Q8N138 153 aa14.56□□□□□ -0.08
VPS29-206ENST00000549578 DEFB104AQ8WTQ1 72 aa14.56□□□□□ -0.08
VPS29-206ENST00000549578 SDHAF1A6NFY7 115 aa14.55□□□□□ -0.08
VPS29-206ENST00000549578 APCSP02743 223 aa14.55□□□□□ -0.08
VPS29-206ENST00000549578 PPBPP02775 128 aa14.55□□□□□ -0.08
VPS29-206ENST00000549578 ST20Q9HBF5 79 aa14.55□□□□□ -0.08
VPS29-206ENST00000549578 LCE6AA0A183 80 aa14.54□□□□□ -0.08
VPS29-206ENST00000549578 PPP1R17O96001 155 aa14.54□□□□□ -0.08
VPS29-206ENST00000549578 KIAA1644Q3SXP7 199 aa14.54□□□□□ -0.08
VPS29-206ENST00000549578 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.54□□□□□ -0.08
VPS29-206ENST00000549578 KMT2CQ8NEZ4 4911 aaKnown RBP14.53□□□□□ -0.08
VPS29-206ENST00000549578 TNFRSF6BO95407 300 aa14.53□□□□□ -0.08
VPS29-206ENST00000549578 NPYP01303 97 aa14.53□□□□□ -0.08
VPS29-206ENST00000549578 MT-ND6P03923 174 aa14.53□□□□□ -0.08
VPS29-206ENST00000549578 LELP1Q5T871 98 aa14.53□□□□□ -0.08
VPS29-206ENST00000549578 PRELID3AQ96N28 172 aa14.53□□□□□ -0.08
VPS29-206ENST00000549578 TMEM70Q9BUB7 260 aa14.53□□□□□ -0.08
VPS29-206ENST00000549578 MRPL18Q9H0U6 180 aaKnown RBP14.53□□□□□ -0.08
VPS29-206ENST00000549578 SACSQ9NZJ4 4579 aa14.53□□□□□ -0.08
VPS29-206ENST00000549578 SUMO2P61956 95 aaKnown RBP14.52□□□□□ -0.08
VPS29-206ENST00000549578 UPK3BQ9BT76 320 aa14.52□□□□□ -0.08
VPS29-206ENST00000549578 NTM-AS1Q6ZSK4 140 aa14.51□□□□□ -0.09
VPS29-206ENST00000549578 WFDC10BQ8IUB3 73 aa14.51□□□□□ -0.09
VPS29-206ENST00000549578 POLR2KP53803 58 aaKnown RBP14.51□□□□□ -0.09
VPS29-206ENST00000549578 FABP9Q0Z7S8 132 aa14.51□□□□□ -0.09
VPS29-206ENST00000549578 TRAPPC1Q9Y5R8 145 aa14.51□□□□□ -0.09
VPS29-206ENST00000549578 TRBV6-8A0A0A6YYG3 113 aa14.5□□□□□ -0.09
VPS29-206ENST00000549578 C20orf78Q9BR46 151 aa14.5□□□□□ -0.09
VPS29-206ENST00000549578 TRAV8-6A0A0B4J262 113 aa14.49□□□□□ -0.09
VPS29-206ENST00000549578 PHOX2AO14813 284 aa14.49□□□□□ -0.09
VPS29-206ENST00000549578 PMCHP20382 165 aa14.49□□□□□ -0.09
VPS29-206ENST00000549578 COTL1Q14019 142 aa14.49□□□□□ -0.09
VPS29-206ENST00000549578 IGLV2-18A0A075B6J9 118 aa14.48□□□□□ -0.09
VPS29-206ENST00000549578 I3L3M4 83 aa14.48□□□□□ -0.09
VPS29-206ENST00000549578 Q9H8V8 135 aa14.48□□□□□ -0.09
VPS29-206ENST00000549578 TRBV27A0A0K0K1C4 114 aa14.47□□□□□ -0.09
VPS29-206ENST00000549578 COLCA2A8K830 154 aa14.47□□□□□ -0.09
VPS29-206ENST00000549578 TMEM97Q5BJF2 176 aa14.47□□□□□ -0.09
VPS29-206ENST00000549578 LAMTOR2Q9Y2Q5 125 aa14.47□□□□□ -0.09
VPS29-206ENST00000549578 VCYO14598 125 aa14.46□□□□□ -0.09
VPS29-206ENST00000549578 SIVA1O15304 175 aa14.46□□□□□ -0.09
VPS29-206ENST00000549578 SMIM2Q9BVW6 85 aa14.46□□□□□ -0.09
VPS29-206ENST00000549578 IGHV1-24A0A0C4DH33 117 aa14.46□□□□□ -0.1
VPS29-206ENST00000549578 TSHBP01222 138 aa14.46□□□□□ -0.1
VPS29-206ENST00000549578 HYDINQ4G0P3 5121 aa14.45□□□□□ -0.1
VPS29-206ENST00000549578 KMT2AQ03164 3969 aa14.45□□□□□ -0.1
VPS29-206ENST00000549578 TRBV25-1A0A075B6N4 114 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms