RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 COX19Q49B96 90 aa8.45□□□□□ -1.06
DDX55-210ENST00000543016 SUMO4Q6EEV6 95 aa8.45□□□□□ -1.06
DDX55-210ENST00000543016 MRPL54Q6P161 138 aaKnown RBP8.45□□□□□ -1.06
DDX55-210ENST00000543016 MRAP2Q96G30 205 aa8.45□□□□□ -1.06
DDX55-210ENST00000543016 CSMD3Q7Z407 3707 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 RAB4AP20338 218 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 TMEM97Q5BJF2 176 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 FAM104BQ5XKR9 115 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 ATP6V0E2Q8NHE4 81 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 LINC00476Q8WZB0 136 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 NIT2Q9NQR4 276 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 TNFRSF18Q9Y5U5 241 aa8.44□□□□□ -1.06
DDX55-210ENST00000543016 LOC100131303A0A0U1RQF7 123 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 GAGE12JA6NER3 117 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 PPBPP02775 128 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 UBE2D3P61077 147 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 UBE2D2P62837 147 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 GAGE1Q13065 139 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 GAGE4Q13068 117 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 GAGE5Q13069 117 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 GAGE13Q4V321 117 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 LYPD5Q6UWN5 251 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 DAZ4Q86SG3 579 aaKnown RBP8.43□□□□□ -1.06
DDX55-210ENST00000543016 UBE2DNLQ8IWF7 75 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 NEXN-AS1Q8NBZ9 246 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 ZNRF2Q8NHG8 242 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 UPK3BQ9BT76 320 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 GTSF1LQ9H1H1 148 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 DAZ3Q9NR90 486 aaKnown RBP8.43□□□□□ -1.06
DDX55-210ENST00000543016 STARD9Q9P2P6 4700 aa8.43□□□□□ -1.06
DDX55-210ENST00000543016 LCE6AA0A183 80 aa8.42□□□□□ -1.06
DDX55-210ENST00000543016 ESRGQ1W209 222 aa8.42□□□□□ -1.06
DDX55-210ENST00000543016 AMN1Q8IY45 258 aa8.42□□□□□ -1.06
DDX55-210ENST00000543016 RNF185Q96GF1 192 aa8.42□□□□□ -1.06
DDX55-210ENST00000543016 MRPS16Q9Y3D3 137 aaKnown RBP8.42□□□□□ -1.06
DDX55-210ENST00000543016 DYNC2H1Q8NCM8 4307 aaKnown RBP8.42□□□□□ -1.06
DDX55-210ENST00000543016 TENM2Q9NT68 2774 aa8.41□□□□□ -1.06
DDX55-210ENST00000543016 TRBV6-5A0A0K0K1A5 114 aa8.41□□□□□ -1.06
DDX55-210ENST00000543016 SMCO4Q9NRQ5 59 aa8.41□□□□□ -1.06
DDX55-210ENST00000543016 LINC00588Q9Y4M8 146 aa8.41□□□□□ -1.06
DDX55-210ENST00000543016 TRBV24-1A0A075B6N3 115 aa8.4□□□□□ -1.06
DDX55-210ENST00000543016 LY6G6CO95867 125 aa8.4□□□□□ -1.06
DDX55-210ENST00000543016 MRPL51Q4U2R6 128 aaKnown RBP8.4□□□□□ -1.06
DDX55-210ENST00000543016 LELP1Q5T871 98 aa8.4□□□□□ -1.06
DDX55-210ENST00000543016 GNB1LQ9BYB4 327 aa8.4□□□□□ -1.06
DDX55-210ENST00000543016 URGCP-MRPS24S4R325 110 aa8.4□□□□□ -1.06
DDX55-210ENST00000543016 TRAV8-6A0A0B4J262 113 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 TRAV26-2A0A0B4J265 109 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 K7EP13 123 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 PHOX2AO14813 284 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 HLA-DQA1P01909 254 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 MT-ND6P03923 174 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 CKS2P33552 79 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 OR10J3Q5JRS4 329 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 Q9UF83 564 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 LAMTOR2Q9Y2Q5 125 aa8.39□□□□□ -1.07
DDX55-210ENST00000543016 ELOBQ15370 118 aa8.38□□□□□ -1.07
DDX55-210ENST00000543016 TMEM136Q6ZRR5 245 aa8.38□□□□□ -1.07
DDX55-210ENST00000543016 ORMDL3Q8N138 153 aa8.38□□□□□ -1.07
DDX55-210ENST00000543016 C20orf78Q9BR46 151 aa8.38□□□□□ -1.07
DDX55-210ENST00000543016 ST20Q9HBF5 79 aa8.38□□□□□ -1.07
DDX55-210ENST00000543016 NCR2O95944 276 aa8.37□□□□□ -1.07
DDX55-210ENST00000543016 S100A1P23297 94 aa8.37□□□□□ -1.07
DDX55-210ENST00000543016 PKIAP61925 76 aa8.37□□□□□ -1.07
DDX55-210ENST00000543016 RPL32P62910 135 aaKnown RBP8.37□□□□□ -1.07
DDX55-210ENST00000543016 ATRAIDQ6UW56 229 aa8.37□□□□□ -1.07
DDX55-210ENST00000543016 Q9H8V8 135 aa8.37□□□□□ -1.07
DDX55-210ENST00000543016 PLECQ15149 4684 aaKnown RBP8.36□□□□□ -1.07
DDX55-210ENST00000543016 TRBV6-8A0A0A6YYG3 113 aa8.36□□□□□ -1.07
DDX55-210ENST00000543016 SDHAF1A6NFY7 115 aa8.36□□□□□ -1.07
DDX55-210ENST00000543016 I3L3M4 83 aa8.36□□□□□ -1.07
DDX55-210ENST00000543016 VCYO14598 125 aa8.36□□□□□ -1.07
DDX55-210ENST00000543016 TCAPO15273 167 aa8.36□□□□□ -1.07
DDX55-210ENST00000543016 SIVA1O15304 175 aa8.36□□□□□ -1.07
DDX55-210ENST00000543016 SUMO2P61956 95 aaKnown RBP8.36□□□□□ -1.07
DDX55-210ENST00000543016 NRACQ8N912 160 aa8.36□□□□□ -1.07
DDX55-210ENST00000543016 RPL39LQ96EH5 51 aaKnown RBP8.36□□□□□ -1.07
DDX55-210ENST00000543016 TRAV9-2A0A087WT02 112 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 TRBV27A0A0K0K1C4 114 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 D6R8Y8 96 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 APCSP02743 223 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 BTF3P20290 206 aaKnown RBP8.35□□□□□ -1.07
DDX55-210ENST00000543016 POLR2KP53803 58 aaKnown RBP8.35□□□□□ -1.07
DDX55-210ENST00000543016 COTL1Q14019 142 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 IQCJQ1A5X6 159 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 TTC32Q5I0X7 151 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 TMEM70Q9BUB7 260 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 CHCHD7Q9BUK0 85 aa8.35□□□□□ -1.07
DDX55-210ENST00000543016 TRBV25-1A0A075B6N4 114 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 TGIF2-C20orf24A0A0A6YYL0 155 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 IGHV1-24A0A0C4DH33 117 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 IGHV3-38A0A0C4DH36 116 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 TNFRSF6BO95407 300 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 DNAH10OSP0CZ25 163 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 PMCHP20382 165 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 RPS10P46783 165 aaKnown RBP8.34□□□□□ -1.07
DDX55-210ENST00000543016 PRELID3AQ96N28 172 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 YPEL4Q96NS1 127 aa8.34□□□□□ -1.07
DDX55-210ENST00000543016 PRSS47A8MTI9 375 aa8.33□□□□□ -1.08
DDX55-210ENST00000543016 SMKR1H3BMG3 65 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms