RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 RPP21Q9H633 154 aaKnown RBP8.41□□□□□ -1.06
CDH3-203ENST00000542274 TMEM167BQ9NRX6 74 aa8.41□□□□□ -1.06
CDH3-203ENST00000542274 ABCA12Q86UK0 2595 aa8.41□□□□□ -1.06
CDH3-203ENST00000542274 USP9YO00507 2555 aaPredicted RBP8.41□□□□□ -1.06
CDH3-203ENST00000542274 PRB4P10163 310 aaPredicted RBP8.41□□□□□ -1.06
CDH3-203ENST00000542274 ATXN8Q156A1 80 aa8.41□□□□□ -1.06
CDH3-203ENST00000542274 SRSF12Q8WXF0 261 aaKnown RBP8.41□□□□□ -1.06
CDH3-203ENST00000542274 KMT2BQ9UMN6 2715 aaPredicted RBP8.4□□□□□ -1.06
CDH3-203ENST00000542274 IGKV1D-37A0A075B6S9 117 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 DOPEY2Q9Y3R5 2298 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 IGHV4-39P01824 125 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 SNRPD3P62318 126 aaKnown RBP8.4□□□□□ -1.06
CDH3-203ENST00000542274 Q6ZRU5 148 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 FAM223AQ8IWN6 122 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 FOXC2Q99958 501 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 TMEM243Q9BU79 118 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 C7orf69Q9H7B7 122 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 ABCA2Q9BZC7 2435 aa8.4□□□□□ -1.06
CDH3-203ENST00000542274 PTPN13Q12923 2485 aa8.4□□□□□ -1.07
CDH3-203ENST00000542274 TENM4Q6N022 2769 aa8.4□□□□□ -1.07
CDH3-203ENST00000542274 FBN2P35556 2912 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 PAX8Q06710 450 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 DEFB121Q5J5C9 76 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 LINC00474Q9P2X8 69 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 ANKRD17O75179 2603 aaKnown RBP8.39□□□□□ -1.07
CDH3-203ENST00000542274 ACYP1P07311 99 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 CFC1BP0CG36 223 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 CFC1P0CG37 223 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 ZFP36P26651 326 aaKnown RBP8.39□□□□□ -1.07
CDH3-203ENST00000542274 FAM104BQ5XKR9 115 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 PATE2Q6UY27 113 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 EEF1AKMT3Q96AZ1 226 aa8.39□□□□□ -1.07
CDH3-203ENST00000542274 TRBV7-1A0A0A6YYK4 115 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 DYNAPQ8N1N2 210 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 S4R3C0 116 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 KNCNA6PVL3 124 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 RPL27AP46776 148 aaKnown RBP8.38□□□□□ -1.07
CDH3-203ENST00000542274 PLGLAQ15195 96 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 PRR15Q8IV56 129 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 LY6G5BQ8NDX9 201 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 PRO1854Q9UHT4 67 aa8.38□□□□□ -1.07
CDH3-203ENST00000542274 APOC4P55056 127 aa8.37□□□□□ -1.07
CDH3-203ENST00000542274 FAM167A-AS1Q96KT0 104 aa8.37□□□□□ -1.07
CDH3-203ENST00000542274 BPESC1Q9GZL8 116 aa8.37□□□□□ -1.07
CDH3-203ENST00000542274 IGF1P05019 195 aa8.37□□□□□ -1.07
CDH3-203ENST00000542274 SAA4P35542 130 aa8.37□□□□□ -1.07
CDH3-203ENST00000542274 ERCC8Q13216 396 aa8.37□□□□□ -1.07
CDH3-203ENST00000542274 CCL19Q99731 98 aa8.37□□□□□ -1.07
CDH3-203ENST00000542274 D6R8Y8 96 aa8.36□□□□□ -1.07
CDH3-203ENST00000542274 LINC00322Q6ZN03 302 aaPredicted RBP8.36□□□□□ -1.07
CDH3-203ENST00000542274 FMC1Q96HJ9 113 aa8.36□□□□□ -1.07
CDH3-203ENST00000542274 MRPL35Q9NZE8 188 aaKnown RBP8.36□□□□□ -1.07
CDH3-203ENST00000542274 RBM12B-AS1Q9P1G2 102 aa8.36□□□□□ -1.07
CDH3-203ENST00000542274 OVOL3O00110 214 aa8.36□□□□□ -1.07
CDH3-203ENST00000542274 SCGB1D4Q6XE38 83 aa8.36□□□□□ -1.07
CDH3-203ENST00000542274 Q8N8P6 123 aa8.36□□□□□ -1.07
CDH3-203ENST00000542274 GFRA4Q9GZZ7 299 aa8.36□□□□□ -1.07
CDH3-203ENST00000542274 COX7A2P2O60397 106 aa8.35□□□□□ -1.07
CDH3-203ENST00000542274 LINC00305Q7Z4B0 112 aa8.35□□□□□ -1.07
CDH3-203ENST00000542274 C11orf44Q8N8P7 122 aa8.35□□□□□ -1.07
CDH3-203ENST00000542274 TIMM17BO60830 172 aa8.35□□□□□ -1.07
CDH3-203ENST00000542274 RHOHQ15669 191 aa8.35□□□□□ -1.07
CDH3-203ENST00000542274 VMO1Q7Z5L0 202 aa8.35□□□□□ -1.07
CDH3-203ENST00000542274 SLC50A1Q9BRV3 221 aa8.35□□□□□ -1.07
CDH3-203ENST00000542274 NBPF19A0A087WUL8 3843 aa8.34□□□□□ -1.07
CDH3-203ENST00000542274 HELZ2Q9BYK8 2649 aaKnown RBP8.34□□□□□ -1.07
CDH3-203ENST00000542274 H7C2G1 150 aa8.34□□□□□ -1.07
CDH3-203ENST00000542274 H7C423 109 aa8.34□□□□□ -1.07
CDH3-203ENST00000542274 FSTL3O95633 263 aa8.34□□□□□ -1.07
CDH3-203ENST00000542274 ZNF492Q9P255 531 aa8.34□□□□□ -1.07
CDH3-203ENST00000542274 SUB1P53999 127 aaKnown RBP eCLIP8.34□□□□□ -1.07
CDH3-203ENST00000542274 C10orf113Q5VZT2 155 aa8.34□□□□□ -1.07
CDH3-203ENST00000542274 DPM3Q9P2X0 92 aa8.34□□□□□ -1.07
CDH3-203ENST00000542274 NDUFA3O95167 84 aa8.33□□□□□ -1.08
CDH3-203ENST00000542274 A0A1B0GUT8 65 aa8.33□□□□□ -1.08
CDH3-203ENST00000542274 ARMS2P0C7Q2 107 aa8.33□□□□□ -1.08
CDH3-203ENST00000542274 NDPQ00604 133 aa8.33□□□□□ -1.08
CDH3-203ENST00000542274 THAP8Q8NA92 274 aa8.33□□□□□ -1.08
CDH3-203ENST00000542274 COX6B1P14854 86 aa8.32□□□□□ -1.08
CDH3-203ENST00000542274 ZNF815PA8K554 130 aa8.32□□□□□ -1.08
CDH3-203ENST00000542274 ODF3BA8MYP8 253 aa8.32□□□□□ -1.08
CDH3-203ENST00000542274 PAXXQ9BUH6 204 aa8.32□□□□□ -1.08
CDH3-203ENST00000542274 IGHV3-23P01764 117 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 KRTAP10-9P60411 292 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 LMO4P61968 165 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 RBM3P98179 157 aaKnown RBP8.31□□□□□ -1.08
CDH3-203ENST00000542274 FXYD5Q96DB9 178 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 MOB4Q9Y3A3 225 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 ZANQ9Y493 2812 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 IGHV3OR16-10A0A075B7F0 116 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 IGHV3-33P01772 117 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 RIGQ13278 110 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 DCANP1Q8TF63 244 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 NAV2Q8IVL1 2488 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 IGHV4-61A0A0C4DH41 118 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 LYZP61626 148 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 SDIM1Q6ZPB5 146 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 ORMDL3Q8N138 153 aa8.31□□□□□ -1.08
CDH3-203ENST00000542274 IGHV4-30-2A0A087WSY4 118 aa8.3□□□□□ -1.08
CDH3-203ENST00000542274 A0A0B4J2C4 111 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms