RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 FAM104AQ969W3 186 aa2.09□□□□□ -2.07
USP28-210ENST00000542033 ZNF714Q96N38 554 aa2.09□□□□□ -2.07
USP28-210ENST00000542033 TIMM17AQ99595 171 aa2.09□□□□□ -2.07
USP28-210ENST00000542033 CCL13Q99616 98 aa2.09□□□□□ -2.07
USP28-210ENST00000542033 MRPL35Q9NZE8 188 aaKnown RBP2.09□□□□□ -2.07
USP28-210ENST00000542033 TAC3Q9UHF0 121 aa2.09□□□□□ -2.07
USP28-210ENST00000542033 PRO1854Q9UHT4 67 aa2.09□□□□□ -2.07
USP28-210ENST00000542033 LINC00588Q9Y4M8 146 aa2.09□□□□□ -2.07
USP28-210ENST00000542033 COL4A1P02462 1669 aa2.09□□□□□ -2.08
USP28-210ENST00000542033 KIAA1549LQ6ZVL6 1849 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 TMSB15BA0A087X1C1 80 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.08□□□□□ -2.08
USP28-210ENST00000542033 A8MUN3 132 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 E7EQL1 145 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 H3BSH0 61 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 TMEM256-PLSCR3K7ERE1 68 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 LST1O00453 97 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 IGKV3-11P04433 115 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 CD70P32970 193 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 ATP11AUNQ6ZP68 121 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 RNASE6Q93091 150 aaKnown RBP2.08□□□□□ -2.08
USP28-210ENST00000542033 CAMK2N2Q96S95 79 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 NPCDR1Q9BY65 106 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 CYSTM1Q9H1C7 97 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 THADAQ6YHU6 1953 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 KIAA1549Q9HCM3 1950 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 LTBP1Q14766 1721 aa2.08□□□□□ -2.08
USP28-210ENST00000542033 NCOA6Q14686 2063 aaPredicted RBP2.08□□□□□ -2.08
USP28-210ENST00000542033 PTPRSQ13332 1948 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 TDRD6O60522 2096 aaKnown RBP2.07□□□□□ -2.08
USP28-210ENST00000542033 TRAV7A0A075B6U4 112 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 TRAV12-1A0A0B4J245 112 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 IGKV1-8A0A0C4DH67 115 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 IQCF6A8MYZ5 107 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 M0R381 172 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 SPINK4O60575 86 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 ERC2-IT1O76042 136 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 IGHV1-8P0DP01 117 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 CCL4P13236 92 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 ZNF32P17041 273 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 ZNF80P51504 273 aaPredicted RBP2.07□□□□□ -2.08
USP28-210ENST00000542033 MP68P56378 58 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 KRTAP10-8P60410 259 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 RBM3P98179 157 aaKnown RBP2.07□□□□□ -2.08
USP28-210ENST00000542033 EIF4EBP1Q13541 118 aaPredicted RBP2.07□□□□□ -2.08
USP28-210ENST00000542033 PLGLAQ15195 96 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 SS18Q15532 418 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 RHOHQ15669 191 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 ESRGQ1W209 222 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 ASB16-AS1Q495Z4 193 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 MRPL51Q4U2R6 128 aaKnown RBP2.07□□□□□ -2.08
USP28-210ENST00000542033 GDF5OSQ5U4N7 250 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 LYPD5Q6UWN5 251 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 C16orf47Q6ZP98 133 aaPredicted RBP2.07□□□□□ -2.08
USP28-210ENST00000542033 ZNF826PQ6ZT77 177 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 C7orf65Q6ZTY9 151 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 VMO1Q7Z5L0 202 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 LINC00596Q86U02 117 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 DIRC1Q969H9 104 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 TIMM21Q9BVV7 248 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 EML5Q05BV3 1969 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 ARHGAP21Q5T5U3 1957 aa2.07□□□□□ -2.08
USP28-210ENST00000542033 A0A096LNJ9 63 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 IGKV2D-26A0A0A0MRZ7 120 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 IGLV3-32A0A0A0MS00 114 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 TRBV6-6A0A0A6YYG2 114 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 IGHV1OR15-9A0A0B4J2B8 117 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 IGHV5-10-1A0A0J9YXX1 117 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 A0A1B0GVX0 72 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 HIGD1CA8MV81 97 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 C19orf84I3L1E1 186 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 COX7A2LO14548 114 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 PSPHP1O15172 72 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 FSTL3O95633 263 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 IGLV2-8P01709 118 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 IGHV3-33P01772 117 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 ARL14EPLP0DKL9 152 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 IAPPP10997 89 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 S100A4P26447 101 aaKnown RBP2.06□□□□□ -2.08
USP28-210ENST00000542033 FCER1GP30273 86 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 CIRBPQ14011 172 aaKnown RBP2.06□□□□□ -2.08
USP28-210ENST00000542033 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.06□□□□□ -2.08
USP28-210ENST00000542033 C15orf56Q8N910 161 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 UBALD1Q8TB05 177 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 WFDC5Q8TCV5 224 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 SPACA5Q96QH8 159 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 NABP2Q9BQ15 211 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 KLK12Q9UKR0 248 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 UBE2D4Q9Y2X8 147 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 LHFPL6Q9Y693 200 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 U3KQK5 164 aa2.06□□□□□ -2.08
USP28-210ENST00000542033 TNS1Q9HBL0 1735 aaKnown RBP2.05□□□□□ -2.08
USP28-210ENST00000542033 LRP4O75096 1905 aa2.05□□□□□ -2.08
USP28-210ENST00000542033 PCDH15Q96QU1 1955 aa2.05□□□□□ -2.08
USP28-210ENST00000542033 ATG2BQ96BY7 2078 aa2.05□□□□□ -2.08
USP28-210ENST00000542033 KIAA2026Q5HYC2 2103 aa2.05□□□□□ -2.08
USP28-210ENST00000542033 LOC389332A0A1B0GUA5 103 aa2.05□□□□□ -2.08
USP28-210ENST00000542033 A0A1B0GW54 56 aa2.05□□□□□ -2.08
USP28-210ENST00000542033 C4orf51C9J302 202 aa2.05□□□□□ -2.08
USP28-210ENST00000542033 K7EMI3 77 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms