RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 INSL3P51460 131 aa12.72□□□□□ -0.37
SPIDR-227ENST00000541342 KLHL30-AS1Q8NEE0 82 aa12.72□□□□□ -0.37
SPIDR-227ENST00000541342 DUX3Q96PT4 197 aa12.72□□□□□ -0.37
SPIDR-227ENST00000541342 GTSF1LQ9H1H1 148 aa12.72□□□□□ -0.37
SPIDR-227ENST00000541342 ZNF815PA8K554 130 aa12.72□□□□□ -0.37
SPIDR-227ENST00000541342 AZU1P20160 251 aa12.71□□□□□ -0.37
SPIDR-227ENST00000541342 C4orf3Q8WVX3 66 aa12.71□□□□□ -0.37
SPIDR-227ENST00000541342 C11orf86A6NJI1 115 aa12.71□□□□□ -0.38
SPIDR-227ENST00000541342 GAGE13Q4V321 117 aa12.71□□□□□ -0.38
SPIDR-227ENST00000541342 IGIPA6NJ69 53 aa12.7□□□□□ -0.38
SPIDR-227ENST00000541342 EMP1P54849 157 aa12.7□□□□□ -0.38
SPIDR-227ENST00000541342 KHDC1LQ5JSQ8 128 aa12.7□□□□□ -0.38
SPIDR-227ENST00000541342 PGPEP1Q9NXJ5 209 aa12.7□□□□□ -0.38
SPIDR-227ENST00000541342 UBE2D1P51668 147 aa12.7□□□□□ -0.38
SPIDR-227ENST00000541342 CD300EQ496F6 205 aaPredicted RBP12.7□□□□□ -0.38
SPIDR-227ENST00000541342 SAMD13Q5VXD3 122 aa12.7□□□□□ -0.38
SPIDR-227ENST00000541342 GAGE12HA6NDE8 117 aa12.69□□□□□ -0.38
SPIDR-227ENST00000541342 KLLNB2CW77 178 aa12.69□□□□□ -0.38
SPIDR-227ENST00000541342 RPL39P62891 51 aaKnown RBP12.69□□□□□ -0.38
SPIDR-227ENST00000541342 TP53TG1Q9Y2A0 90 aa12.69□□□□□ -0.38
SPIDR-227ENST00000541342 ID1P41134 155 aa12.69□□□□□ -0.38
SPIDR-227ENST00000541342 POLR2KP53803 58 aaKnown RBP12.69□□□□□ -0.38
SPIDR-227ENST00000541342 TRBV7-9A0A0J9YWB2 115 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 SMCPP49901 116 aaPredicted RBP12.68□□□□□ -0.38
SPIDR-227ENST00000541342 SUMO4Q6EEV6 95 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 SPATA25Q9BR10 227 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 K7EQG2 157 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 CD7P09564 240 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 ZNF688P0C7X2 276 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 ZFP2Q6ZN57 461 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 WFDC12Q8WWY7 111 aa12.68□□□□□ -0.38
SPIDR-227ENST00000541342 TSPEAR-AS2P59090 65 aa12.67□□□□□ -0.38
SPIDR-227ENST00000541342 LINC01549A6NIU2 74 aa12.67□□□□□ -0.38
SPIDR-227ENST00000541342 RNASE1P07998 156 aaKnown RBP12.67□□□□□ -0.38
SPIDR-227ENST00000541342 SMAGPQ0VAQ4 97 aa12.67□□□□□ -0.38
SPIDR-227ENST00000541342 SIGMAR1Q99720 223 aa12.67□□□□□ -0.38
SPIDR-227ENST00000541342 TSPAN13O95857 204 aa12.67□□□□□ -0.38
SPIDR-227ENST00000541342 PPP1R17O96001 155 aa12.67□□□□□ -0.38
SPIDR-227ENST00000541342 RPL32P62910 135 aaKnown RBP12.67□□□□□ -0.38
SPIDR-227ENST00000541342 C11orf44Q8N8P7 122 aa12.67□□□□□ -0.38
SPIDR-227ENST00000541342 MRPL16Q9NX20 251 aaKnown RBP12.67□□□□□ -0.38
SPIDR-227ENST00000541342 A0A087WWL8 130 aa12.66□□□□□ -0.38
SPIDR-227ENST00000541342 SCGB1D4Q6XE38 83 aa12.66□□□□□ -0.38
SPIDR-227ENST00000541342 A0A0J9YY99 117 aa12.65□□□□□ -0.38
SPIDR-227ENST00000541342 SCGB2A2Q13296 93 aa12.65□□□□□ -0.38
SPIDR-227ENST00000541342 CFAP126Q5VTH2 177 aa12.65□□□□□ -0.38
SPIDR-227ENST00000541342 SFTA2Q6UW10 78 aa12.65□□□□□ -0.38
SPIDR-227ENST00000541342 DLX4Q92988 240 aaPredicted RBP12.65□□□□□ -0.38
SPIDR-227ENST00000541342 ZNRF2Q8NHG8 242 aa12.65□□□□□ -0.38
SPIDR-227ENST00000541342 NOTCH2Q04721 2471 aa12.65□□□□□ -0.38
SPIDR-227ENST00000541342 CD28P10747 220 aa12.64□□□□□ -0.39
SPIDR-227ENST00000541342 AMELXQ99217 191 aa12.64□□□□□ -0.39
SPIDR-227ENST00000541342 LINC01006Q8NI28 216 aa12.64□□□□□ -0.39
SPIDR-227ENST00000541342 LY6G6DO95868 133 aa12.64□□□□□ -0.39
SPIDR-227ENST00000541342 SRSF9Q13242 221 aaKnown RBP eCLIP12.64□□□□□ -0.39
SPIDR-227ENST00000541342 PMVKQ15126 192 aa12.64□□□□□ -0.39
SPIDR-227ENST00000541342 UBE2D3P61077 147 aa12.63□□□□□ -0.39
SPIDR-227ENST00000541342 SNRPD3P62318 126 aaKnown RBP12.63□□□□□ -0.39
SPIDR-227ENST00000541342 UBE2D2P62837 147 aa12.63□□□□□ -0.39
SPIDR-227ENST00000541342 SORL1Q92673 2214 aa12.63□□□□□ -0.39
SPIDR-227ENST00000541342 RAX2Q96IS3 184 aa12.63□□□□□ -0.39
SPIDR-227ENST00000541342 C16orf95Q9H693 158 aa12.63□□□□□ -0.39
SPIDR-227ENST00000541342 SETD2Q9BYW2 2564 aaPredicted RBP12.62□□□□□ -0.39
SPIDR-227ENST00000541342 TRAV12-3A0A0B4J271 114 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 SDHAF1A6NFY7 115 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 HILS1P60008 231 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 FAM159AQ6UWV7 190 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 NFE4Q86UQ8 179 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 A0A0J9YX75 114 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 A0A1W2PRX2 142 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 J3QR89 54 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 TRBV27A0A0K0K1C4 114 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 TMEM238LA0A1B0GVL6 79 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 A6NJY4 79 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 SCGB1A1P11684 91 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 NDUFA11Q86Y39 141 aa12.62□□□□□ -0.39
SPIDR-227ENST00000541342 HIVEP2P31629 2446 aa12.61□□□□□ -0.39
SPIDR-227ENST00000541342 ZNF876PQ49A33 203 aa12.61□□□□□ -0.39
SPIDR-227ENST00000541342 TIMM17AQ99595 171 aa12.61□□□□□ -0.39
SPIDR-227ENST00000541342 PEMTQ9UBM1 199 aa12.61□□□□□ -0.39
SPIDR-227ENST00000541342 VCYO14598 125 aa12.61□□□□□ -0.39
SPIDR-227ENST00000541342 IGHV3-30P01768 117 aa12.61□□□□□ -0.39
SPIDR-227ENST00000541342 IGHV3-30-5P0DP03 117 aa12.61□□□□□ -0.39
SPIDR-227ENST00000541342 ZNF418Q8TF45 676 aaPredicted RBP12.61□□□□□ -0.39
SPIDR-227ENST00000541342 APOMO95445 188 aa12.6□□□□□ -0.39
SPIDR-227ENST00000541342 CITED2Q99967 270 aaPredicted RBP12.6□□□□□ -0.39
SPIDR-227ENST00000541342 TMEM141Q96I45 108 aa12.6□□□□□ -0.39
SPIDR-227ENST00000541342 C1QTNF4Q9BXJ3 329 aa12.6□□□□□ -0.39
SPIDR-227ENST00000541342 MDFICQ9P1T7 246 aa12.6□□□□□ -0.39
SPIDR-227ENST00000541342 IGKV3-20P01619 116 aa12.6□□□□□ -0.39
SPIDR-227ENST00000541342 FOXI1Q12951 378 aa12.6□□□□□ -0.39
SPIDR-227ENST00000541342 KIR2DL4Q99706 377 aa12.6□□□□□ -0.39
SPIDR-227ENST00000541342 NIPBLQ6KC79 2804 aaeCLIP12.59□□□□□ -0.395e-6■■■■■ 32.2
SPIDR-227ENST00000541342 F5H697 171 aa12.59□□□□□ -0.39
SPIDR-227ENST00000541342 CFC1BP0CG36 223 aa12.59□□□□□ -0.39
SPIDR-227ENST00000541342 CFC1P0CG37 223 aa12.59□□□□□ -0.39
SPIDR-227ENST00000541342 C9orf85Q96MD7 179 aa12.59□□□□□ -0.39
SPIDR-227ENST00000541342 OPRPNQ99935 248 aaPredicted RBP12.59□□□□□ -0.39
SPIDR-227ENST00000541342 IGHV3-16A0A0C4DH30 117 aa12.59□□□□□ -0.39
SPIDR-227ENST00000541342 LOC107984156A0A0G2JMH3 177 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms