RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ATP6V0E2Q8NHE4 81 aa12.17□□□□□ -0.46
CLSTN3-210ENST00000540931 LINC00476Q8WZB0 136 aa12.17□□□□□ -0.46
CLSTN3-210ENST00000540931 TNFRSF18Q9Y5U5 241 aa12.17□□□□□ -0.46
CLSTN3-210ENST00000540931 DAZ4Q86SG3 579 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-210ENST00000540931 GTSF1LQ9H1H1 148 aa12.16□□□□□ -0.46
CLSTN3-210ENST00000540931 NIT2Q9NQR4 276 aa12.16□□□□□ -0.46
CLSTN3-210ENST00000540931 DAZ3Q9NR90 486 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-210ENST00000540931 K7EP13 123 aa12.15□□□□□ -0.46
CLSTN3-210ENST00000540931 M0QY20 66 aa12.15□□□□□ -0.46
CLSTN3-210ENST00000540931 CAMPP49913 170 aa12.15□□□□□ -0.46
CLSTN3-210ENST00000540931 GATD1Q8NB37 220 aa12.15□□□□□ -0.46
CLSTN3-210ENST00000540931 UPK3BQ9BT76 320 aa12.15□□□□□ -0.46
CLSTN3-210ENST00000540931 A0A1B0GXF2 115 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 LY6G6CO95867 125 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 PPBPP02775 128 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 SUMO4Q6EEV6 95 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 LYPD5Q6UWN5 251 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 Q6ZSN1 163 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 SLC7A5P1Q8MH63 180 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 ZNRF2Q8NHG8 242 aa12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 MRPS16Q9Y3D3 137 aaKnown RBP12.14□□□□□ -0.47
CLSTN3-210ENST00000540931 GAGE12JA6NER3 117 aa12.13□□□□□ -0.47
CLSTN3-210ENST00000540931 GAGE1Q13065 139 aa12.13□□□□□ -0.47
CLSTN3-210ENST00000540931 GAGE4Q13068 117 aa12.13□□□□□ -0.47
CLSTN3-210ENST00000540931 GAGE5Q13069 117 aa12.13□□□□□ -0.47
CLSTN3-210ENST00000540931 GAGE13Q4V321 117 aa12.13□□□□□ -0.47
CLSTN3-210ENST00000540931 FAM104BQ5XKR9 115 aa12.13□□□□□ -0.47
CLSTN3-210ENST00000540931 MRPL54Q6P161 138 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-210ENST00000540931 TRAV8-6A0A0B4J262 113 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 LINC00694P0DN24 101 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 RAB4AP20338 218 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 UBE2D3P61077 147 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 PKIAP61925 76 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 UBE2D2P62837 147 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 ESRGQ1W209 222 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 NEXN-AS1Q8NBZ9 246 aa12.12□□□□□ -0.47
CLSTN3-210ENST00000540931 LELP1Q5T871 98 aa12.11□□□□□ -0.47
CLSTN3-210ENST00000540931 LOC100131303A0A0U1RQF7 123 aa12.1□□□□□ -0.47
CLSTN3-210ENST00000540931 MT-ND6P03923 174 aa12.1□□□□□ -0.47
CLSTN3-210ENST00000540931 AMN1Q8IY45 258 aa12.1□□□□□ -0.47
CLSTN3-210ENST00000540931 LINC00588Q9Y4M8 146 aa12.1□□□□□ -0.47
CLSTN3-210ENST00000540931 TRAV9-2A0A087WT02 112 aa12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 TRBV6-5A0A0K0K1A5 114 aa12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 PHOX2AO14813 284 aa12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 TCAPO15273 167 aa12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 HLA-DQA1P01909 254 aa12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 CKS2P33552 79 aa12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 LAMTOR2Q9Y2Q5 125 aa12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 PLECQ15149 4684 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-210ENST00000540931 BTF3P20290 206 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-210ENST00000540931 TTC32Q5I0X7 151 aa12.08□□□□□ -0.48
CLSTN3-210ENST00000540931 OR10J3Q5JRS4 329 aa12.08□□□□□ -0.48
CLSTN3-210ENST00000540931 RNF185Q96GF1 192 aa12.08□□□□□ -0.48
CLSTN3-210ENST00000540931 GNB1LQ9BYB4 327 aa12.08□□□□□ -0.48
CLSTN3-210ENST00000540931 ST20Q9HBF5 79 aa12.08□□□□□ -0.48
CLSTN3-210ENST00000540931 SIVA1O15304 175 aa12.07□□□□□ -0.48
CLSTN3-210ENST00000540931 NCR2O95944 276 aa12.07□□□□□ -0.48
CLSTN3-210ENST00000540931 ORMDL3Q8N138 153 aa12.07□□□□□ -0.48
CLSTN3-210ENST00000540931 C20orf78Q9BR46 151 aa12.07□□□□□ -0.48
CLSTN3-210ENST00000540931 Q9H8V8 135 aa12.07□□□□□ -0.48
CLSTN3-210ENST00000540931 SMCO4Q9NRQ5 59 aa12.07□□□□□ -0.48
CLSTN3-210ENST00000540931 URGCP-MRPS24S4R325 110 aa12.07□□□□□ -0.48
CLSTN3-210ENST00000540931 TRBV24-1A0A075B6N3 115 aa12.06□□□□□ -0.48
CLSTN3-210ENST00000540931 MRPL51Q4U2R6 128 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-210ENST00000540931 CHCHD7Q9BUK0 85 aa12.06□□□□□ -0.48
CLSTN3-210ENST00000540931 COTL1Q14019 142 aa12.05□□□□□ -0.48
CLSTN3-210ENST00000540931 C10orf126Q8N4M7 172 aa12.05□□□□□ -0.48
CLSTN3-210ENST00000540931 TRBV25-1A0A075B6N4 114 aa12.04□□□□□ -0.48
CLSTN3-210ENST00000540931 TRBV6-8A0A0A6YYG3 113 aa12.04□□□□□ -0.48
CLSTN3-210ENST00000540931 TRAV26-2A0A0B4J265 109 aa12.04□□□□□ -0.48
CLSTN3-210ENST00000540931 SDHAF1A6NFY7 115 aa12.04□□□□□ -0.48
CLSTN3-210ENST00000540931 VCYO14598 125 aa12.04□□□□□ -0.48
CLSTN3-210ENST00000540931 RPL32P62910 135 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-210ENST00000540931 IGHV3-38A0A0C4DH36 116 aa12.03□□□□□ -0.48
CLSTN3-210ENST00000540931 I3L3M4 83 aa12.03□□□□□ -0.48
CLSTN3-210ENST00000540931 SUMO2P61956 95 aaKnown RBP12.03□□□□□ -0.48
CLSTN3-210ENST00000540931 ELOBQ15370 118 aa12.03□□□□□ -0.48
CLSTN3-210ENST00000540931 TMEM136Q6ZRR5 245 aa12.03□□□□□ -0.48
CLSTN3-210ENST00000540931 KIR2DL4Q99706 377 aa12.03□□□□□ -0.48
CLSTN3-210ENST00000540931 IGHV1-24A0A0C4DH33 117 aa12.02□□□□□ -0.49
CLSTN3-210ENST00000540931 TRBV27A0A0K0K1C4 114 aa12.02□□□□□ -0.49
CLSTN3-210ENST00000540931 PMCHP20382 165 aa12.02□□□□□ -0.49
CLSTN3-210ENST00000540931 S100A1P23297 94 aa12.02□□□□□ -0.49
CLSTN3-210ENST00000540931 SMAGPQ0VAQ4 97 aa12.02□□□□□ -0.49
CLSTN3-210ENST00000540931 Q9UF83 564 aa12.02□□□□□ -0.49
CLSTN3-210ENST00000540931 D6R8Y8 96 aa12.01□□□□□ -0.49
CLSTN3-210ENST00000540931 APCSP02743 223 aa12.01□□□□□ -0.49
CLSTN3-210ENST00000540931 DNAH10OSP0CZ25 163 aa12.01□□□□□ -0.49
CLSTN3-210ENST00000540931 IQCJQ1A5X6 159 aa12.01□□□□□ -0.49
CLSTN3-210ENST00000540931 LINC01556Q5JQF7 62 aa12.01□□□□□ -0.49
CLSTN3-210ENST00000540931 H7C423 109 aa12□□□□□ -0.49
CLSTN3-210ENST00000540931 TNFRSF6BO95407 300 aa12□□□□□ -0.49
CLSTN3-210ENST00000540931 POLR2KP53803 58 aaKnown RBP12□□□□□ -0.49
CLSTN3-210ENST00000540931 RPL39LQ96EH5 51 aaKnown RBP12□□□□□ -0.49
CLSTN3-210ENST00000540931 PRELID3AQ96N28 172 aa12□□□□□ -0.49
CLSTN3-210ENST00000540931 TMEM70Q9BUB7 260 aa12□□□□□ -0.49
CLSTN3-210ENST00000540931 ALMS1Q8TCU4 4167 aa12□□□□□ -0.49
CLSTN3-210ENST00000540931 A0A087WX48 190 aa11.99□□□□□ -0.49
CLSTN3-210ENST00000540931 NBDYA0A0U1RRE5 68 aa11.99□□□□□ -0.49
CLSTN3-210ENST00000540931 PRSS47A8MTI9 375 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms