RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 RPL27AP46776 148 aaKnown RBP7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 VMA21Q3ZAQ7 101 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 CLEC2BQ92478 149 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 LINC00574Q9H8X3 128 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 PYGO1Q9Y3Y4 419 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 NBPF19A0A087WUL8 3843 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 ASH1LQ9NR48 2969 aaKnown RBP7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 LGALS3P17931 250 aaKnown RBP7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 DLX6P56179 175 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 PAPPA-AS1Q5QFB9 102 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 HIST2H2BCQ6DN03 193 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 ZNF491Q8N8L2 437 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 CCL13Q99616 98 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 ICOSQ9Y6W8 199 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 CSMD2Q7Z408 3487 aa7.15□□□□□ -1.26
CTNNA1-243ENST00000540387 IGKV3D-20A0A0C4DH25 116 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 ATOX1O00244 68 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 MALP21145 153 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 CXCL5P42830 114 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 SUMO2P61956 95 aaKnown RBP7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 RNF152Q8N8N0 203 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 I3L2K1 104 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 UBE2E1P51965 193 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 SEC61GP60059 68 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 HIST1H4AP62805 103 aaKnown RBP7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 IGFL4Q6B9Z1 124 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 PRO0628Q9UI54 55 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 MAP1AP78559 2803 aaPredicted RBP7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 MED13LQ71F56 2210 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 TSHBP01222 138 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 LYPD2Q6UXB3 125 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 FAM216BQ8N7L0 139 aa7.14□□□□□ -1.27
CTNNA1-243ENST00000540387 RAI1Q7Z5J4 1906 aaPredicted RBP7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 LST1O00453 97 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 EDN2P20800 178 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 KRTAP10-9P60411 292 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 NSUN5P1Q3KNT7 163 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 TMEM30BQ3MIR4 351 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 GAFA1Q96PS6 74 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 CCL19Q99731 98 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 C11orf21Q9P2W6 132 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 TRAV13-1A0A0B4J241 112 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 IGHV7-4-1A0A0J9YVY3 117 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 TINCRA0A1B0GVN0 87 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 COX6CP09669 75 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 SDIM1Q6ZPB5 146 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 RPL39LQ96EH5 51 aaKnown RBP7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 C1orf43Q9BWL3 253 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 VPS13CQ709C8 3753 aa7.13□□□□□ -1.27
CTNNA1-243ENST00000540387 TRBV7-1A0A0A6YYK4 115 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 DLX1P56177 255 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 SPANXN1Q5VSR9 72 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 SLC50A1Q9BRV3 221 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 TRAV8-3A0A0A6YYJ7 113 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 ENSAO43768 121 aaKnown RBP7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 RHOHQ15669 191 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 UPK3BQ9BT76 320 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 AGPAT4-IT1Q9H0P7 198 aa7.12□□□□□ -1.27
CTNNA1-243ENST00000540387 IGHV3-72A0A0B4J1Y9 119 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 RNF223E7ERA6 249 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 DCANP1Q8TF63 244 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 NAV2Q8IVL1 2488 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 MALRD1Q5VYJ5 2156 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 TEX22C9J3V5 150 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 LINC00336Q6ZUF6 198 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 DYNAPQ8N1N2 210 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 C8orf31Q8N9H6 132 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 DPH3P1Q9H4G8 78 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 CSMD1Q96PZ7 3565 aa7.11□□□□□ -1.27
CTNNA1-243ENST00000540387 HECTD1Q9ULT8 2610 aa7.1□□□□□ -1.27
CTNNA1-243ENST00000540387 IGHV4-4A0A075B6R2 117 aa7.1□□□□□ -1.27
CTNNA1-243ENST00000540387 RPL35AP18077 110 aaKnown RBP7.1□□□□□ -1.27
CTNNA1-243ENST00000540387 C10orf105Q8TEF2 133 aa7.1□□□□□ -1.27
CTNNA1-243ENST00000540387 CCL3L1P16619 93 aa7.1□□□□□ -1.27
CTNNA1-243ENST00000540387 APCP25054 2843 aa7.1□□□□□ -1.27
CTNNA1-243ENST00000540387 IGIPA6NJ69 53 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 I3L3M4 83 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 K7EIM0 57 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 LEPROTO15243 131 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 PFN2P35080 140 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 RPL18AQ02543 176 aaKnown RBP7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 Q6ZSV7 163 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 PEMTQ9UBM1 199 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 KAAG1Q9UBP8 84 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 TP53TG1Q9Y2A0 90 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 PKIGQ9Y2B9 76 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 PRAC2D3DTV9 90 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 NDUFB3O43676 98 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 SERP2Q8N6R1 65 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 TIMM21Q9BVV7 248 aa7.09□□□□□ -1.27
CTNNA1-243ENST00000540387 BPESC1Q9GZL8 116 aa7.08□□□□□ -1.28
CTNNA1-243ENST00000540387 S4R3C0 116 aa7.08□□□□□ -1.28
CTNNA1-243ENST00000540387 IGHV3-64A0A075B6Q5 118 aa7.08□□□□□ -1.28
CTNNA1-243ENST00000540387 IGHV1-69DA0A0B4J2H0 117 aa7.08□□□□□ -1.28
CTNNA1-243ENST00000540387 ZNF876PQ49A33 203 aa7.08□□□□□ -1.28
CTNNA1-243ENST00000540387 A0A0J9YXY3 114 aa7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 DEFB104AQ8WTQ1 72 aa7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 SMAD5-AS1Q9Y6J3 95 aa7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 UNC79Q9P2D8 2635 aa7.07□□□□□ -1.28
CTNNA1-243ENST00000540387 SVEP1Q4LDE5 3571 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms