RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 TMEM223A0PJW6 202 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 RHODO00212 210 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 ZNF22P17026 224 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-237ENST00000539504 GAGE2BQ13066 116 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 ATXN8Q156A1 80 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 GAGE2EQ4V326 116 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 APRG1Q8IVJ8 170 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 POM121L12Q8N7R1 296 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 AMELXQ99217 191 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 GAGE2DQ9UEU5 116 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-237ENST00000539504 M0QY20 66 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 LGALS9O00182 355 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 CD28P10747 220 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 GATA3P23771 443 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 C19orf54Q5BKX5 351 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 TMEM95Q3KNT9 176 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 TMEM263Q8WUH6 116 aaKnown RBP8.37□□□□□ -1.07
SYNE1-237ENST00000539504 IGHV3-16A0A0C4DH30 117 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 RHOHQ15669 191 aa8.37□□□□□ -1.07
SYNE1-237ENST00000539504 I3L3M4 83 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 IGHG2P01859 326 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 SNRPD3P62318 126 aaKnown RBP8.36□□□□□ -1.07
SYNE1-237ENST00000539504 LINC01620Q4KN68 170 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 SBSPONQ8IVN8 264 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 C20orf203Q8NBC4 194 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 TIMM21Q9BVV7 248 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 TRBV6-5A0A0K0K1A5 114 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 IGHV1OR15-1A0A075B7D0 117 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 P0DMU3 169 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 FAM231AP0DMU4 169 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 FAM231CP0DMU5 169 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 TTC32Q5I0X7 151 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 SS18L2Q9UHA2 77 aa8.36□□□□□ -1.07
SYNE1-237ENST00000539504 TRAV8-3A0A0A6YYJ7 113 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 ELANEP08246 267 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 CEMP1Q6PRD7 247 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-237ENST00000539504 MAP1AP78559 2803 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-237ENST00000539504 A0A0B4J2C4 111 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 A0A0J9YXY3 114 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 TEX49A0A1B0GTD5 131 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 M0R2P5 195 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 IGLV4-3A0A075B6K6 122 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 TRAV8-4A0A0B4J246 113 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 EIF4EBP3O60516 100 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-237ENST00000539504 NSUN5P1Q3KNT7 163 aa8.35□□□□□ -1.07
SYNE1-237ENST00000539504 B5MCH6 92 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 IGHV3-30-3P0DP02 117 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 C2orf82Q6UX34 121 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 DCANP1Q8TF63 244 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 IGHV4-61A0A0C4DH41 118 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 KNCNA6PVL3 124 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 H3BUA1 57 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 DUX5Q96PT3 197 aa8.34□□□□□ -1.07
SYNE1-237ENST00000539504 COX6CP09669 75 aa8.34□□□□□ -1.08
SYNE1-237ENST00000539504 C9orf85Q96MD7 179 aa8.34□□□□□ -1.08
SYNE1-237ENST00000539504 TRAV4A0A0B4J268 109 aa8.33□□□□□ -1.08
SYNE1-237ENST00000539504 TRIAP1O43715 76 aa8.33□□□□□ -1.08
SYNE1-237ENST00000539504 NDUFA12Q9UI09 145 aa8.33□□□□□ -1.08
SYNE1-237ENST00000539504 TNFRSF18Q9Y5U5 241 aa8.33□□□□□ -1.08
SYNE1-237ENST00000539504 NCOR2Q9Y618 2525 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 A0A0J9YX75 114 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 H3BMM0 161 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 GAGE5Q13069 117 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 GAGE6Q13070 117 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 UBE2WQ96B02 151 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 PIMREGQ9BSJ6 248 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 A8MZ25 164 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 A6NDX4 124 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 CRLF1O75462 422 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 C15orf53Q8NAA6 179 aa8.32□□□□□ -1.08
SYNE1-237ENST00000539504 NBL1P41271 181 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 SYNJ2BPP57105 145 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 PROK1P58294 105 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 C10orf99Q6UWK7 81 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 TRBV10-2A0A0K0K1G8 114 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 Q6ZSV7 163 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 K7EMT4 169 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 LY6DQ14210 128 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 CLEC2BQ92478 149 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 ICOSQ9Y6W8 199 aa8.31□□□□□ -1.08
SYNE1-237ENST00000539504 NOTCH3Q9UM47 2321 aa8.3□□□□□ -1.08
SYNE1-237ENST00000539504 TRGV11A0A075B6L2 103 aa8.3□□□□□ -1.08
SYNE1-237ENST00000539504 DAND5Q8N907 189 aa8.3□□□□□ -1.08
SYNE1-237ENST00000539504 A0A0U1RRA0 63 aa8.3□□□□□ -1.08
SYNE1-237ENST00000539504 C19orf84I3L1E1 186 aa8.3□□□□□ -1.08
SYNE1-237ENST00000539504 UCNP55089 124 aa8.3□□□□□ -1.08
SYNE1-237ENST00000539504 CITED1Q99966 193 aa8.3□□□□□ -1.08
SYNE1-237ENST00000539504 PRRC2AP48634 2157 aaKnown RBP8.29□□□□□ -1.08
SYNE1-237ENST00000539504 IGLV1-40P01703 118 aa8.29□□□□□ -1.08
SYNE1-237ENST00000539504 NDUFV3P56181 108 aaKnown RBP8.29□□□□□ -1.08
SYNE1-237ENST00000539504 ADAMTSL4-AS1Q5T5F5 129 aa8.29□□□□□ -1.08
SYNE1-237ENST00000539504 COL12A1Q99715 3063 aa8.29□□□□□ -1.08
SYNE1-237ENST00000539504 TRBV30A0A0K0K1B3 111 aa8.29□□□□□ -1.08
SYNE1-237ENST00000539504 PRM2P04554 102 aa8.29□□□□□ -1.08
SYNE1-237ENST00000539504 IFITM1P13164 125 aa8.29□□□□□ -1.08
SYNE1-237ENST00000539504 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-237ENST00000539504 IGHV3-38A0A0C4DH36 116 aa8.28□□□□□ -1.08
SYNE1-237ENST00000539504 IGKV2-29A2NJV5 120 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-237ENST00000539504 CELSR1Q9NYQ6 3014 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms