RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	MT-ND6	P03923	174 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	LINC00315	P59091	139 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	RAB4B	P61018	213 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	GAGE2B	Q13066	116 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	GAGE2E	Q4V326	116 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647		Q6AWC8	147 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	GAGE2A	Q6NT46	116 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	MRPL54	Q6P161	138 aa	Known RBP	7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	RASL11A	Q6T310	242 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647		Q6ZTI0	123 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	NUP35	Q8NFH5	326 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	TM2D2	Q9BX73	214 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	VCX2	Q9H322	139 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	GAGE2D	Q9UEU5	116 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	LRP1B	Q9NZR2	4599 aa		7.91	□□□□□ -1.14
CTNND1-238	ENST00000534647	TRAV12-3	A0A0B4J271	114 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	TRBV7-9	A0A0J9YWB2	115 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	EPM2A	B3EWF7	344 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	SIVA1	O15304	175 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	ORM1	P02763	201 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	CRIP1	P50238	77 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	FABP9	Q0Z7S8	132 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	ATP5L2	Q7Z4Y8	100 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	C11orf72	Q8NBR9	251 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	PGLYRP4	Q96LB8	373 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	GNB1L	Q9BYB4	327 aa		7.9	□□□□□ -1.14
CTNND1-238	ENST00000534647	TMSB15B	A0A087X1C1	80 aa		7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	ZNF324	O75467	553 aa	Predicted RBP	7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	HLA-DQA1	P01909	254 aa		7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	S100A8	P05109	93 aa		7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	TRGC1	P0CF51	173 aa		7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	XG	P55808	180 aa		7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	RIG	Q13278	110 aa		7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	FAM19A4	Q96LR4	140 aa		7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	APOB	P04114	4563 aa	Known RBP	7.89	□□□□□ -1.15
CTNND1-238	ENST00000534647	TRGV2	A0A075B6R0	118 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	TRAV21	A0A0B4J279	112 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	KRTAP23-1	A1A580	65 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	KLLN	B2CW77	178 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647		K7EP13	123 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	GPX1	P07203	203 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	GZMB	P10144	247 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	ZNF80	P51504	273 aa	Predicted RBP	7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	NDUFA6	P56556	154 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	HBB	P68871	147 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	GSN-AS1	Q9NRJ2	163 aa		7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647	DMBT1	Q9UGM3	2413 aa	Predicted RBP	7.88	□□□□□ -1.15
CTNND1-238	ENST00000534647		A0A0U1RRA0	63 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647		A0A1B0GUT8	65 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	LOC105371267	A0A1B0GV96	52 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647		A0A1B0GW15	77 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	C7orf71	A4D174	169 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BK	O60814	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BJ	P06899	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BO	P23527	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BB	P33778	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	FOXA3	P55318	350 aa	Predicted RBP	7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BD	P58876	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BC	P62807	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	SLA	Q13239	276 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST2H2BE	Q16778	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647		Q6ZSN1	163 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	NFE4	Q86UQ8	179 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	GTSF1	Q8WW33	167 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BH	Q93079	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BN	Q99877	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	HIST1H2BM	Q99879	126 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	DNAH5	Q8TE73	4624 aa		7.87	□□□□□ -1.15
CTNND1-238	ENST00000534647	NXPH4	O95158	308 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	APCS	P02743	223 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	INAFM2	P0DMQ5	153 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	CRISP2	P16562	243 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	RNASE4	P34096	147 aa	Known RBP	7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	SST	P61278	116 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	TMEM136	Q6ZRR5	245 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	FER1L6-AS1	Q8NA97	138 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	PRO0255	Q9UI72	69 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	ICOS	Q9Y6W8	199 aa		7.86	□□□□□ -1.15
CTNND1-238	ENST00000534647	TRAV9-2	A0A087WT02	112 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	TRGV1	A0A0A0MS02	117 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647		A0A1B0GXF2	115 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	GRIFIN	A4D1Z8	144 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	PAX4	O43316	350 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	LYPD5	Q6UWN5	251 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	LYZL1	Q6UWQ5	148 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	ZFAND2A	Q8N6M9	145 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	TMEM18	Q96B42	140 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647	NAGK	Q9UJ70	344 aa		7.85	□□□□□ -1.15
CTNND1-238	ENST00000534647		F2Z2F3	143 aa		7.84	□□□□□ -1.15
CTNND1-238	ENST00000534647	RHOD	O00212	210 aa		7.84	□□□□□ -1.15
CTNND1-238	ENST00000534647	PHOX2A	O14813	284 aa		7.84	□□□□□ -1.15
CTNND1-238	ENST00000534647	CRYBA4	P53673	196 aa		7.84	□□□□□ -1.15
CTNND1-238	ENST00000534647	MRPL23	Q16540	153 aa	Known RBP	7.84	□□□□□ -1.15
CTNND1-238	ENST00000534647	HHLA3	Q9XRX5	114 aa		7.84	□□□□□ -1.15
CTNND1-238	ENST00000534647		A0A087WTM6	91 aa		7.83	□□□□□ -1.16
CTNND1-238	ENST00000534647	ARMS2	P0C7Q2	107 aa		7.83	□□□□□ -1.16
CTNND1-238	ENST00000534647	IGLC6	P0CF74	106 aa		7.83	□□□□□ -1.16
CTNND1-238	ENST00000534647	S100A4	P26447	101 aa	Known RBP	7.83	□□□□□ -1.16
CTNND1-238	ENST00000534647	CTRL	P40313	264 aa		7.83	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms