RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 BOD1L2Q8IYS8 172 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 INO80EQ8NBZ0 244 aaPredicted RBP3.89□□□□□ -1.79
CD44-237ENST00000534082 DYNC2LI1Q8TCX1 351 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 PTH2Q96A98 100 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 SMIM12Q96EX1 92 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 C9orf85Q96MD7 179 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 MIXL1Q9H2W2 232 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 PRR34Q9NV39 138 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 GSKIPQ9P0R6 139 aa3.89□□□□□ -1.79
CD44-237ENST00000534082 IGLV1-50A0A075B6I6 118 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 FAM24AA6NFZ4 105 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 A8MWV9 139 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 RGS5O15539 181 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 SNAI2O43623 268 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 PTTG1O95997 202 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 AKAIN1P0CW23 69 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 CSN1S1P47710 185 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 LSM3P62310 102 aaKnown RBP3.88□□□□□ -1.79
CD44-237ENST00000534082 ARL16Q0P5N6 197 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 ZFP69Q49AA0 526 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 COX19Q49B96 90 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 NRARPQ7Z6K4 114 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 LINC00269Q8N2A0 174 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 PHYHIPLQ96FC7 376 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 SCGB3A2Q96PL1 93 aa3.88□□□□□ -1.79
CD44-237ENST00000534082 SSPOA2VEC9 5147 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 USH2AO75445 5202 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 TRBV6-8A0A0A6YYG3 113 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 DDTP30046 118 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 S100A11P31949 105 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 RPS10P46783 165 aaKnown RBP3.87□□□□□ -1.79
CD44-237ENST00000534082 SSBP1Q04837 148 aaKnown RBP3.87□□□□□ -1.79
CD44-237ENST00000534082 NEDD8Q15843 81 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 TRIQKQ629K1 86 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 UFSP1Q6NVU6 142 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 MRPL52Q86TS9 123 aaKnown RBP3.87□□□□□ -1.79
CD44-237ENST00000534082 TMED6Q8WW62 240 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 DIRC1Q969H9 104 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 SMIM8Q96KF7 97 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 CHCHD5Q9BSY4 110 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 SLC25A2Q9BXI2 301 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 LINC00474Q9P2X8 69 aa3.87□□□□□ -1.79
CD44-237ENST00000534082 SYNE2Q8WXH0 6885 aaKnown RBP3.87□□□□□ -1.79
CD44-237ENST00000534082 KRBOX1C9JBD0 128 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 RHODO00212 210 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 MT-ND6P03923 174 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 NPSP0C0P6 89 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 RNASE3P12724 160 aaKnown RBP3.86□□□□□ -1.79
CD44-237ENST00000534082 UBE2D1P51668 147 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 UBE2D3P61077 147 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 PKIAP61925 76 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 UBE2D2P62837 147 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 VAMP3Q15836 100 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 LGALSLQ3ZCW2 172 aaPredicted RBP3.86□□□□□ -1.79
CD44-237ENST00000534082 C9orf62Q8N4C0 152 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 C15orf56Q8N910 161 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 FER1L6-AS1Q8NA97 138 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 C15orf40Q8WUR7 153 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 JPT2Q9H910 190 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 MCUBQ9NWR8 336 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 SCP2D1Q9UJQ7 156 aa3.86□□□□□ -1.79
CD44-237ENST00000534082 TRAV1-1A0A0B4J248 108 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 C5orf52A6NGY3 159 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 H0Y9J4 135 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 TSPAN13O95857 204 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 KRTAP1-4P0C5Y4 121 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 RPL29P47914 159 aaKnown RBP3.85□□□□□ -1.79
CD44-237ENST00000534082 S100A10P60903 97 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 MRPS10P82664 201 aaKnown RBP3.85□□□□□ -1.79
CD44-237ENST00000534082 RPL36AP83881 106 aaKnown RBP3.85□□□□□ -1.79
CD44-237ENST00000534082 TMEM128Q5BJH2 165 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 GCSAMLQ5JQS6 135 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 FAM74A4Q5TZK3 123 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 COMMD7Q86VX2 200 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 MTURNQ8N3F0 131 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 OCC1Q8TAD7 63 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 SMIM4Q8WVI0 70 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 RPL36ALQ969Q0 106 aaKnown RBP3.85□□□□□ -1.79
CD44-237ENST00000534082 FXYD5Q96DB9 178 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 TVP23CQ96ET8 276 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 FAM167A-AS1Q96KT0 104 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 GFRA4Q9GZZ7 299 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 FLVCR2Q9UPI3 526 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 WDR83OSQ9Y284 106 aa3.85□□□□□ -1.79
CD44-237ENST00000534082 TRBV7-3A0A075B6L6 115 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 TRBV10-1A0A0K0K1A3 114 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 UBE2L5PA0A1B0GUS4 154 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 TSTD3H0UI37 97 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 IL7P13232 177 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 RPL13AP40429 203 aaKnown RBP3.84□□□□□ -1.79
CD44-237ENST00000534082 RAB5CP51148 216 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 TAS2R30P59541 319 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 RANP62826 216 aaKnown RBP3.84□□□□□ -1.79
CD44-237ENST00000534082 REG3AQ06141 175 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 ATP6V1FQ16864 119 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 HIGD2BQ4VC39 106 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 C1orf137Q5JT78 98 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 PIK3CD-AS1Q5SR53 167 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 MIR17HGQ75NE6 70 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 S100ZQ8WXG8 99 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms