RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 GFRA4Q9GZZ7 299 aa13.45□□□□□ -0.26
CPSF1-209ENST00000532725 DPH3P1Q9H4G8 78 aa13.45□□□□□ -0.26
CPSF1-209ENST00000532725 TNFRSF18Q9Y5U5 241 aa13.45□□□□□ -0.26
CPSF1-209ENST00000532725 FAM231BA6NCW3 169 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 MGPP08493 103 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 TNP2Q05952 138 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 ADIRFQ15847 76 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 SUMO4Q6EEV6 95 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 C15orf54Q8N8G6 183 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 PKD1P98161 4303 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 HECTD4Q9Y4D8 3996 aa13.44□□□□□ -0.26
CPSF1-209ENST00000532725 Q6ZRN7 208 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-209ENST00000532725 HIGD1CA8MV81 97 aa13.42□□□□□ -0.26
CPSF1-209ENST00000532725 C10orf126Q8N4M7 172 aa13.41□□□□□ -0.26
CPSF1-209ENST00000532725 DNAJC30Q96LL9 226 aa13.41□□□□□ -0.26
CPSF1-209ENST00000532725 H7C1H1 209 aa13.4□□□□□ -0.26
CPSF1-209ENST00000532725 A0A1B0GUT8 65 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 IBA57-AS1B1ANH7 110 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 IGHV3-30P01768 117 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 IGHV3-33P01772 117 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 IGHV3-30-3P0DP02 117 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 IGHV3-30-5P0DP03 117 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 RASL11AQ6T310 242 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 DAZ4Q86SG3 579 aaKnown RBP13.39□□□□□ -0.27
CPSF1-209ENST00000532725 Q8N3U1 123 aa13.39□□□□□ -0.27
CPSF1-209ENST00000532725 DAZ3Q9NR90 486 aaKnown RBP13.39□□□□□ -0.27
CPSF1-209ENST00000532725 DNAH11Q96DT5 4516 aa13.38□□□□□ -0.27
CPSF1-209ENST00000532725 SMIM15Q7Z3B0 74 aa13.38□□□□□ -0.27
CPSF1-209ENST00000532725 NFE4Q86UQ8 179 aa13.38□□□□□ -0.27
CPSF1-209ENST00000532725 NUP35Q8NFH5 326 aa13.38□□□□□ -0.27
CPSF1-209ENST00000532725 NIT2Q9NQR4 276 aa13.38□□□□□ -0.27
CPSF1-209ENST00000532725 TRBV6-8A0A0A6YYG3 113 aa13.37□□□□□ -0.27
CPSF1-209ENST00000532725 NTM-AS1Q6ZSK4 140 aa13.37□□□□□ -0.27
CPSF1-209ENST00000532725 NIT1Q86X76 327 aa13.37□□□□□ -0.27
CPSF1-209ENST00000532725 GATD1Q8NB37 220 aa13.37□□□□□ -0.27
CPSF1-209ENST00000532725 BORCS7Q96B45 105 aa13.37□□□□□ -0.27
CPSF1-209ENST00000532725 SMIM27A0A1W2PRY6 76 aa13.36□□□□□ -0.27
CPSF1-209ENST00000532725 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-209ENST00000532725 NAT8BQ9UHF3 227 aa13.36□□□□□ -0.27
CPSF1-209ENST00000532725 TRAV26-2A0A0B4J265 109 aa13.35□□□□□ -0.27
CPSF1-209ENST00000532725 FRZBQ92765 325 aa13.35□□□□□ -0.27
CPSF1-209ENST00000532725 TMEM97Q5BJF2 176 aa13.34□□□□□ -0.27
CPSF1-209ENST00000532725 TMEM191AQ9H0A3 160 aa13.34□□□□□ -0.27
CPSF1-209ENST00000532725 PKHD1P08F94 4074 aa13.34□□□□□ -0.27
CPSF1-209ENST00000532725 RIGQ13278 110 aa13.33□□□□□ -0.28
CPSF1-209ENST00000532725 DYNC1H1Q14204 4646 aaKnown RBP13.32□□□□□ -0.28
CPSF1-209ENST00000532725 PNRC1Q12796 327 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-209ENST00000532725 LAGE3Q14657 143 aa13.31□□□□□ -0.28
CPSF1-209ENST00000532725 UQCC3Q6UW78 93 aa13.31□□□□□ -0.28
CPSF1-209ENST00000532725 RNF185Q96GF1 192 aa13.31□□□□□ -0.28
CPSF1-209ENST00000532725 CHCHD7Q9BUK0 85 aa13.31□□□□□ -0.28
CPSF1-209ENST00000532725 URGCP-MRPS24S4R325 110 aa13.31□□□□□ -0.28
CPSF1-209ENST00000532725 TMEM262E9PQX1 116 aa13.3□□□□□ -0.28
CPSF1-209ENST00000532725 RAB4AP20338 218 aa13.3□□□□□ -0.28
CPSF1-209ENST00000532725 IQCJQ1A5X6 159 aa13.3□□□□□ -0.28
CPSF1-209ENST00000532725 RPL39LQ96EH5 51 aaKnown RBP13.3□□□□□ -0.28
CPSF1-209ENST00000532725 A0A087WX48 190 aa13.29□□□□□ -0.28
CPSF1-209ENST00000532725 GAS8-AS1O95177 125 aa13.29□□□□□ -0.28
CPSF1-209ENST00000532725 CHCHD5Q9BSY4 110 aa13.29□□□□□ -0.28
CPSF1-209ENST00000532725 Q9HAA7 133 aa13.29□□□□□ -0.28
CPSF1-209ENST00000532725 TRBV25-1A0A075B6N4 114 aa13.28□□□□□ -0.28
CPSF1-209ENST00000532725 TMEM218A2RU14 115 aa13.28□□□□□ -0.28
CPSF1-209ENST00000532725 PPP1R2P9O14990 202 aa13.28□□□□□ -0.28
CPSF1-209ENST00000532725 KCNIP4Q6PIL6 250 aa13.28□□□□□ -0.28
CPSF1-209ENST00000532725 AMN1Q8IY45 258 aa13.28□□□□□ -0.28
CPSF1-209ENST00000532725 KLK12Q9UKR0 248 aa13.28□□□□□ -0.28
CPSF1-209ENST00000532725 TRAV8-3A0A0A6YYJ7 113 aa13.27□□□□□ -0.29
CPSF1-209ENST00000532725 IGHV1-24A0A0C4DH33 117 aa13.27□□□□□ -0.29
CPSF1-209ENST00000532725 A0A087WTM6 91 aa13.26□□□□□ -0.29
CPSF1-209ENST00000532725 TRBV6-5A0A0K0K1A5 114 aa13.26□□□□□ -0.29
CPSF1-209ENST00000532725 ELOBQ15370 118 aa13.26□□□□□ -0.29
CPSF1-209ENST00000532725 MPV17L2Q567V2 206 aa13.26□□□□□ -0.29
CPSF1-209ENST00000532725 ATRAIDQ6UW56 229 aa13.26□□□□□ -0.29
CPSF1-209ENST00000532725 SPATA12Q7Z6I5 190 aa13.26□□□□□ -0.29
CPSF1-209ENST00000532725 DEFB104AQ8WTQ1 72 aa13.26□□□□□ -0.29
CPSF1-209ENST00000532725 A0A1B0GW15 77 aa13.25□□□□□ -0.29
CPSF1-209ENST00000532725 MT-ND4LP03901 98 aa13.25□□□□□ -0.29
CPSF1-209ENST00000532725 ADCYAP1P18509 176 aa13.25□□□□□ -0.29
CPSF1-209ENST00000532725 KRTAP10-2P60368 255 aa13.25□□□□□ -0.29
CPSF1-209ENST00000532725 PKIAP61925 76 aa13.25□□□□□ -0.29
CPSF1-209ENST00000532725 ANAPC16Q96DE5 110 aa13.25□□□□□ -0.29
CPSF1-209ENST00000532725 MRAP2Q96G30 205 aa13.25□□□□□ -0.29
CPSF1-209ENST00000532725 SDHAF1A6NFY7 115 aa13.24□□□□□ -0.29
CPSF1-209ENST00000532725 CAMPP49913 170 aa13.24□□□□□ -0.29
CPSF1-209ENST00000532725 GAGE6Q13070 117 aa13.24□□□□□ -0.29
CPSF1-209ENST00000532725 COTL1Q14019 142 aa13.24□□□□□ -0.29
CPSF1-209ENST00000532725 FAM104BQ5XKR9 115 aa13.24□□□□□ -0.29
CPSF1-209ENST00000532725 COMMD7Q86VX2 200 aa13.24□□□□□ -0.29
CPSF1-209ENST00000532725 TM2D2Q9BX73 214 aa13.24□□□□□ -0.29
CPSF1-209ENST00000532725 A0A1B0GXF2 115 aa13.23□□□□□ -0.29
CPSF1-209ENST00000532725 LINC00862A6NCI5 91 aa13.23□□□□□ -0.29
CPSF1-209ENST00000532725 LRCOL1A6NCL2 159 aa13.23□□□□□ -0.29
CPSF1-209ENST00000532725 PSCAO43653 123 aa13.23□□□□□ -0.29
CPSF1-209ENST00000532725 RPS10P46783 165 aaKnown RBP13.23□□□□□ -0.29
CPSF1-209ENST00000532725 Q8N976 141 aa13.23□□□□□ -0.29
CPSF1-209ENST00000532725 TMEM243Q9BU79 118 aa13.23□□□□□ -0.29
CPSF1-209ENST00000532725 F8W036 122 aa13.22□□□□□ -0.29
CPSF1-209ENST00000532725 RBX1P62877 108 aa13.22□□□□□ -0.29
CPSF1-209ENST00000532725 MRPL54Q6P161 138 aaKnown RBP13.22□□□□□ -0.29
CPSF1-209ENST00000532725 ENHOQ6UWT2 76 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms