RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 RPS10P5Q9NQ39 176 aa9.66□□□□□ -0.86
USF1-209ENST00000529476 A0A087WWC5 75 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 TRAV26-2A0A0B4J265 109 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 A0A1B0GW15 77 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 A0A1B0GXF2 115 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 HBBP68871 147 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 RPL36AP83881 106 aaKnown RBP9.65□□□□□ -0.86
USF1-209ENST00000529476 SH2D6Q7Z4S9 175 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 AMN1Q8IY45 258 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 SVBPQ8N300 66 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 ATP6V0E2Q8NHE4 81 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 RPL36ALQ969Q0 106 aaKnown RBP9.65□□□□□ -0.86
USF1-209ENST00000529476 IMMP2LQ96T52 175 aa9.65□□□□□ -0.86
USF1-209ENST00000529476 H7C1H1 209 aa9.64□□□□□ -0.87
USF1-209ENST00000529476 SNAPINO95295 136 aa9.64□□□□□ -0.87
USF1-209ENST00000529476 RASL11AQ6T310 242 aa9.64□□□□□ -0.87
USF1-209ENST00000529476 GATD1Q8NB37 220 aa9.64□□□□□ -0.87
USF1-209ENST00000529476 RNF185Q96GF1 192 aa9.64□□□□□ -0.87
USF1-209ENST00000529476 TMEM242Q9NWH2 141 aa9.64□□□□□ -0.87
USF1-209ENST00000529476 MRPS16Q9Y3D3 137 aaKnown RBP9.64□□□□□ -0.87
USF1-209ENST00000529476 TRBV7-3A0A075B6L6 115 aa9.63□□□□□ -0.87
USF1-209ENST00000529476 RAB4AP20338 218 aa9.63□□□□□ -0.87
USF1-209ENST00000529476 UBE2D3P61077 147 aa9.63□□□□□ -0.87
USF1-209ENST00000529476 UBE2D2P62837 147 aa9.63□□□□□ -0.87
USF1-209ENST00000529476 KCNIP4Q6PIL6 250 aa9.63□□□□□ -0.87
USF1-209ENST00000529476 ATP5L2Q7Z4Y8 100 aa9.63□□□□□ -0.87
USF1-209ENST00000529476 BTF3L4Q96K17 158 aa9.63□□□□□ -0.87
USF1-209ENST00000529476 GAS8-AS1O95177 125 aa9.62□□□□□ -0.87
USF1-209ENST00000529476 S100A8P05109 93 aa9.62□□□□□ -0.87
USF1-209ENST00000529476 GTSF1LQ9H1H1 148 aa9.62□□□□□ -0.87
USF1-209ENST00000529476 TNFRSF18Q9Y5U5 241 aa9.62□□□□□ -0.87
USF1-209ENST00000529476 URGCP-MRPS24S4R325 110 aa9.62□□□□□ -0.87
USF1-209ENST00000529476 VPS13DQ5THJ4 4388 aa9.62□□□□□ -0.87
USF1-209ENST00000529476 IGHV3-38A0A0C4DH36 116 aa9.61□□□□□ -0.87
USF1-209ENST00000529476 S100PP25815 95 aa9.61□□□□□ -0.87
USF1-209ENST00000529476 TIRAPP58753 221 aa9.61□□□□□ -0.87
USF1-209ENST00000529476 FAM104BQ5XKR9 115 aa9.61□□□□□ -0.87
USF1-209ENST00000529476 RPL39LQ96EH5 51 aaKnown RBP9.61□□□□□ -0.87
USF1-209ENST00000529476 DNAJC30Q96LL9 226 aa9.61□□□□□ -0.87
USF1-209ENST00000529476 UPK3BQ9BT76 320 aa9.61□□□□□ -0.87
USF1-209ENST00000529476 NIT2Q9NQR4 276 aa9.61□□□□□ -0.87
USF1-209ENST00000529476 SMKR1H3BMG3 65 aa9.6□□□□□ -0.87
USF1-209ENST00000529476 NCR2O95944 276 aa9.6□□□□□ -0.87
USF1-209ENST00000529476 ATRAIDQ6UW56 229 aa9.6□□□□□ -0.87
USF1-209ENST00000529476 MRAP2Q96G30 205 aa9.6□□□□□ -0.87
USF1-209ENST00000529476 IGLV2-18A0A075B6J9 118 aa9.59□□□□□ -0.87
USF1-209ENST00000529476 TRAV9-1A0A075B6T8 112 aa9.59□□□□□ -0.87
USF1-209ENST00000529476 MRPL51Q4U2R6 128 aaKnown RBP9.59□□□□□ -0.87
USF1-209ENST00000529476 FRZBQ92765 325 aa9.59□□□□□ -0.87
USF1-209ENST00000529476 Q9H8V8 135 aa9.59□□□□□ -0.87
USF1-209ENST00000529476 RPS10P46783 165 aaKnown RBP9.58□□□□□ -0.88
USF1-209ENST00000529476 OR10J3Q5JRS4 329 aa9.58□□□□□ -0.88
USF1-209ENST00000529476 LELP1Q5T871 98 aa9.58□□□□□ -0.88
USF1-209ENST00000529476 WFDC10BQ8IUB3 73 aa9.58□□□□□ -0.88
USF1-209ENST00000529476 DNAH10Q8IVF4 4471 aa9.58□□□□□ -0.88
USF1-209ENST00000529476 DAZ4Q86SG3 579 aaKnown RBP9.57□□□□□ -0.88
USF1-209ENST00000529476 DEFB104AQ8WTQ1 72 aa9.57□□□□□ -0.88
USF1-209ENST00000529476 DAZ3Q9NR90 486 aaKnown RBP9.57□□□□□ -0.88
USF1-209ENST00000529476 TRAV8-6A0A0B4J262 113 aa9.56□□□□□ -0.88
USF1-209ENST00000529476 M0R2N4 97 aa9.56□□□□□ -0.88
USF1-209ENST00000529476 SIVA1O15304 175 aa9.56□□□□□ -0.88
USF1-209ENST00000529476 CKS2P33552 79 aa9.56□□□□□ -0.88
USF1-209ENST00000529476 TMEM136Q6ZRR5 245 aa9.56□□□□□ -0.88
USF1-209ENST00000529476 NTM-AS1Q6ZSK4 140 aa9.56□□□□□ -0.88
USF1-209ENST00000529476 NRACQ8N912 160 aa9.56□□□□□ -0.88
USF1-209ENST00000529476 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.56□□□□□ -0.88
USF1-209ENST00000529476 TGIF2-C20orf24A0A0A6YYL0 155 aa9.55□□□□□ -0.88
USF1-209ENST00000529476 TRBV6-5A0A0K0K1A5 114 aa9.55□□□□□ -0.88
USF1-209ENST00000529476 D6R8Y8 96 aa9.55□□□□□ -0.88
USF1-209ENST00000529476 ST20Q9HBF5 79 aa9.55□□□□□ -0.88
USF1-209ENST00000529476 TRBV6-8A0A0A6YYG3 113 aa9.54□□□□□ -0.88
USF1-209ENST00000529476 SDHAF1A6NFY7 115 aa9.54□□□□□ -0.88
USF1-209ENST00000529476 ELOBQ15370 118 aa9.54□□□□□ -0.88
USF1-209ENST00000529476 NBDYA0A0U1RRE5 68 aa9.53□□□□□ -0.88
USF1-209ENST00000529476 TMEM97Q5BJF2 176 aa9.53□□□□□ -0.88
USF1-209ENST00000529476 Q6ZR54 194 aa9.53□□□□□ -0.88
USF1-209ENST00000529476 CBLN2Q8IUK8 224 aa9.53□□□□□ -0.88
USF1-209ENST00000529476 TMEM70Q9BUB7 260 aa9.53□□□□□ -0.88
USF1-209ENST00000529476 KRTAP1-5Q9BYS1 174 aa9.53□□□□□ -0.88
USF1-209ENST00000529476 TNFRSF6BO95407 300 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 PPP1R17O96001 155 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 NPYP01303 97 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 PPBPP02775 128 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 DNAH10OSP0CZ25 163 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 POLR2KP53803 58 aaKnown RBP9.52□□□□□ -0.89
USF1-209ENST00000529476 COTL1Q14019 142 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 ORMDL3Q8N138 153 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 Q8N3U1 123 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 YPEL4Q96NS1 127 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 GNB1LQ9BYB4 327 aa9.52□□□□□ -0.89
USF1-209ENST00000529476 TRBV24-1A0A075B6N3 115 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 I3L3M4 83 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 IGHV3-30P01768 117 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 IGHV3-33P01772 117 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 HLA-DQA1P01909 254 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 IGHV3-30-3P0DP02 117 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 IGHV3-30-5P0DP03 117 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 PMCHP20382 165 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 SUMO2P61956 95 aaKnown RBP9.51□□□□□ -0.89
USF1-209ENST00000529476 IQCJQ1A5X6 159 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms