RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 SPAG11BQ08648 103 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 C4orf48Q5BLP8 95 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 PLXNB3Q9ULL4 1909 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 TRBV6-1A0A0K0K1D8 114 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 NTN5Q8WTR8 489 aaPredicted RBP12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 CCDC140Q96MF4 163 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 SPATA25Q9BR10 227 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 IGLV2-14P01704 120 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 BAALC-AS2P0C853 105 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 MAJINQ3KP22 176 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 CDPF1Q6NVV7 123 aa12.39□□□□□ -0.43
PCDHA3-201ENST00000522353 ANKRD29Q8N6D5 301 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 KIR2DL5BA0A0G2JN68 375 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 KIR2DL5BA0A0G2JPC4 375 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 KIR2DL5AQ8N109 375 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 KMT2EQ8IZD2 1858 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 TRAV12-1A0A0B4J245 112 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 RNF183Q96D59 192 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 CITED1Q99966 193 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 DSCAMO60469 2012 aa12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 CHD3Q12873 2000 aaKnown RBP12.38□□□□□ -0.43
PCDHA3-201ENST00000522353 CTRLP40313 264 aa12.37□□□□□ -0.43
PCDHA3-201ENST00000522353 DEFB1P60022 68 aa12.37□□□□□ -0.43
PCDHA3-201ENST00000522353 Q6ZSV7 163 aa12.37□□□□□ -0.43
PCDHA3-201ENST00000522353 TIMM17AQ99595 171 aa12.37□□□□□ -0.43
PCDHA3-201ENST00000522353 LYRM9A8MSI8 78 aa12.37□□□□□ -0.43
PCDHA3-201ENST00000522353 C15orf53Q8NAA6 179 aa12.37□□□□□ -0.43
PCDHA3-201ENST00000522353 OPRPNQ99935 248 aaPredicted RBP12.37□□□□□ -0.43
PCDHA3-201ENST00000522353 NDUFS5O43920 106 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 DEFB114Q30KQ6 69 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 C22orf34Q6ZV56 151 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 ODF3Q96PU9 254 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 IGHV4-4A0A075B6R2 117 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 LY6G6DO95868 133 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 C11orf71Q6IPW1 123 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 MDFICQ9P1T7 246 aa12.36□□□□□ -0.43
PCDHA3-201ENST00000522353 GTSF1Q8WW33 167 aa12.35□□□□□ -0.43
PCDHA3-201ENST00000522353 TMEM131Q92545 1883 aa12.35□□□□□ -0.43
PCDHA3-201ENST00000522353 LINC01548A6NM66 108 aa12.35□□□□□ -0.43
PCDHA3-201ENST00000522353 H3BQ85 93 aa12.34□□□□□ -0.43
PCDHA3-201ENST00000522353 MYO9AB2RTY4 2548 aa12.34□□□□□ -0.43
PCDHA3-201ENST00000522353 EBI3Q14213 229 aa12.34□□□□□ -0.43
PCDHA3-201ENST00000522353 GAGE12HA6NDE8 117 aa12.34□□□□□ -0.43
PCDHA3-201ENST00000522353 ACYP1P07311 99 aa12.34□□□□□ -0.43
PCDHA3-201ENST00000522353 K7EQG2 157 aa12.33□□□□□ -0.43
PCDHA3-201ENST00000522353 NDUFB1O75438 58 aa12.33□□□□□ -0.43
PCDHA3-201ENST00000522353 CCL25O15444 150 aa12.33□□□□□ -0.44
PCDHA3-201ENST00000522353 RPL39P62891 51 aaKnown RBP12.33□□□□□ -0.44
PCDHA3-201ENST00000522353 NCOA6Q14686 2063 aaPredicted RBP12.33□□□□□ -0.44
PCDHA3-201ENST00000522353 FAM222AQ5U5X8 452 aa12.33□□□□□ -0.44
PCDHA3-201ENST00000522353 TRAV26-1A0A087WT03 109 aa12.32□□□□□ -0.44
PCDHA3-201ENST00000522353 CRYBA4P53673 196 aa12.32□□□□□ -0.44
PCDHA3-201ENST00000522353 TOMM6Q96B49 74 aa12.32□□□□□ -0.44
PCDHA3-201ENST00000522353 ANKRD39Q53RE8 183 aa12.32□□□□□ -0.44
PCDHA3-201ENST00000522353 MUSTN1Q8IVN3 82 aa12.32□□□□□ -0.44
PCDHA3-201ENST00000522353 A4D1N5 150 aa12.31□□□□□ -0.44
PCDHA3-201ENST00000522353 DEFB131BA0A096LNP1 70 aa12.31□□□□□ -0.44
PCDHA3-201ENST00000522353 PROP1O75360 226 aa12.31□□□□□ -0.44
PCDHA3-201ENST00000522353 C20orf203Q8NBC4 194 aa12.31□□□□□ -0.44
PCDHA3-201ENST00000522353 LINC00173Q6ZV60 143 aa12.3□□□□□ -0.44
PCDHA3-201ENST00000522353 IGKV1D-37A0A075B6S9 117 aa12.3□□□□□ -0.44
PCDHA3-201ENST00000522353 BAALCQ8WXS3 180 aa12.3□□□□□ -0.44
PCDHA3-201ENST00000522353 MIFP14174 115 aa12.3□□□□□ -0.44
PCDHA3-201ENST00000522353 Q6ZTI0 123 aa12.29□□□□□ -0.44
PCDHA3-201ENST00000522353 HIGD1BQ9P298 99 aa12.29□□□□□ -0.44
PCDHA3-201ENST00000522353 P0C879 139 aa12.29□□□□□ -0.44
PCDHA3-201ENST00000522353 PLA2G2AP14555 144 aa12.29□□□□□ -0.44
PCDHA3-201ENST00000522353 COL4A3Q01955 1670 aa12.29□□□□□ -0.44
PCDHA3-201ENST00000522353 TRACP01848 142 aa12.29□□□□□ -0.44
PCDHA3-201ENST00000522353 PIEZO2Q9H5I5 2752 aa12.28□□□□□ -0.44
PCDHA3-201ENST00000522353 E9PLD3 99 aa12.28□□□□□ -0.44
PCDHA3-201ENST00000522353 C19orf71A6NCJ1 209 aa12.28□□□□□ -0.44
PCDHA3-201ENST00000522353 C11orf86A6NJI1 115 aa12.28□□□□□ -0.44
PCDHA3-201ENST00000522353 NUPR1O60356 82 aa12.28□□□□□ -0.44
PCDHA3-201ENST00000522353 PSMG3-AS1Q96PY0 264 aa12.28□□□□□ -0.44
PCDHA3-201ENST00000522353 C11orf1Q9H5F2 150 aa12.27□□□□□ -0.45
PCDHA3-201ENST00000522353 DIRC1Q969H9 104 aa12.27□□□□□ -0.45
PCDHA3-201ENST00000522353 LY6LH3BQJ8 138 aa12.26□□□□□ -0.45
PCDHA3-201ENST00000522353 TLN1Q9Y490 2541 aaKnown RBP12.26□□□□□ -0.45
PCDHA3-201ENST00000522353 LINC01006Q8NI28 216 aa12.25□□□□□ -0.45
PCDHA3-201ENST00000522353 SPANXCQ9NY87 97 aa12.25□□□□□ -0.45
PCDHA3-201ENST00000522353 MED12LQ86YW9 2145 aa12.25□□□□□ -0.45
PCDHA3-201ENST00000522353 C2CD3Q4AC94 2353 aa12.25□□□□□ -0.45
PCDHA3-201ENST00000522353 CRYGDP07320 174 aa12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 B9D2Q9BPU9 175 aa12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 ZNF106Q9H2Y7 1883 aaKnown RBP12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 NCR3O14931 201 aa12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 REG3AQ06141 175 aa12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 IGHV1-58A0A0C4DH39 117 aa12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 IGKV2-24A0A0C4DH68 120 aa12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 LINC01620Q4KN68 170 aa12.24□□□□□ -0.45
PCDHA3-201ENST00000522353 JMJD1CQ15652 2540 aa12.23□□□□□ -0.45
PCDHA3-201ENST00000522353 CRYGBP07316 175 aa12.23□□□□□ -0.45
PCDHA3-201ENST00000522353 PCDH15Q96QU1 1955 aa12.23□□□□□ -0.45
PCDHA3-201ENST00000522353 DENND4AQ7Z401 1863 aa12.23□□□□□ -0.45
PCDHA3-201ENST00000522353 UFSP1Q6NVU6 142 aa12.23□□□□□ -0.45
PCDHA3-201ENST00000522353 MIR7-3HGQ8N6C7 128 aa12.23□□□□□ -0.45
PCDHA3-201ENST00000522353 TRAV10A0A0B4J240 114 aa12.22□□□□□ -0.45
PCDHA3-201ENST00000522353 JMJD7-PLA2G4BH0Y9G9 81 aa12.22□□□□□ -0.45
PCDHA3-201ENST00000522353 ODF1Q14990 250 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms