RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 OR7C2O60412 319 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 CRPP02741 224 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 SRP19P09132 144 aaKnown RBP7□□□□□ -1.29
LIMCH1-221ENST00000515785 STAG3L2P0CL84 134 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 STAG3L3P0CL85 134 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 CDC34P49427 236 aaPredicted RBP7□□□□□ -1.29
LIMCH1-221ENST00000515785 RPL19P84098 196 aaKnown RBP7□□□□□ -1.29
LIMCH1-221ENST00000515785 C10orf91Q5T1B1 145 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 GOLT1AQ6ZVE7 132 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 TMEM75Q8N9X5 138 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 C7orf33Q8WU49 177 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 SGK494Q96LW2 274 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 C9orf85Q96MD7 179 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 ACTR3CQ9C0K3 210 aaPredicted RBP7□□□□□ -1.29
LIMCH1-221ENST00000515785 MUC2Q02817 5179 aa7□□□□□ -1.29
LIMCH1-221ENST00000515785 ZNF80P51504 273 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-221ENST00000515785 CIRBPQ14011 172 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-221ENST00000515785 UQCC3Q6UW78 93 aa6.99□□□□□ -1.29
LIMCH1-221ENST00000515785 ZFP2Q6ZN57 461 aa6.99□□□□□ -1.29
LIMCH1-221ENST00000515785 SCO1O75880 301 aa6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 MBP02144 154 aa6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 ANGP03950 147 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 ARL14EPLP0DKL9 152 aa6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 UBE2L3P68036 154 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 REG3GQ6UW15 175 aa6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 CMTM2Q8TAZ6 248 aa6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 LINC00479Q96M42 142 aa6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 GNG13Q9P2W3 67 aa6.98□□□□□ -1.29
LIMCH1-221ENST00000515785 IGHV3-64A0A075B6Q5 118 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 A8MWV9 139 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 RNASE3P12724 160 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 GNG5P63218 68 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 PRR3P79522 188 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 CLPSL2Q6UWE3 100 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 SUN5Q8TC36 379 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 PTH2Q96A98 100 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 RNF185Q96GF1 192 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 CHCHD7Q9BUK0 85 aa6.97□□□□□ -1.29
LIMCH1-221ENST00000515785 A0A087WWL8 130 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 A0A1W2PPV4 95 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 hDV102S1A0JD36 115 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 PAGE4O60829 102 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 BCL2P10415 239 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 GCHFRP30047 84 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 MPV17L2Q567V2 206 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 SPACA4Q8TDM5 124 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 EIF5A2Q9GZV4 153 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 KCNIP2Q9NS61 270 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 PLAC8Q9NZF1 115 aa6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 CARHSP1Q9Y2V2 147 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-221ENST00000515785 KRBOX1C9JBD0 128 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 GCGP01275 180 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 UBE2G2P60604 165 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 PEA15Q15121 130 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 KHDC3LQ587J8 217 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 FAM74A4Q5TZK3 123 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 UFSP1Q6NVU6 142 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 OTORQ9NRC9 128 aa6.95□□□□□ -1.3
LIMCH1-221ENST00000515785 MUC21A0A0G2JKD1 596 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 A0A0U1RQV1 116 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 FAM74A7A6NL05 159 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 CXorf1O96002 111 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 SLPIP03973 132 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 S100A4P26447 101 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 MIAQ16674 131 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 KRTAP26-1Q6PEX3 210 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 SPINK6Q6UWN8 80 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 CLRN3Q8NCR9 226 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 NDFIP1Q9BT67 221 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 SEC11CQ9BY50 192 aa6.94□□□□□ -1.3
LIMCH1-221ENST00000515785 IGLV10-54A0A075B6I4 117 aa6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 F8W036 122 aa6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 APOC3P02656 99 aa6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 CNBPP62633 177 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 MAJINQ3KP22 176 aa6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 CHCHD5Q9BSY4 110 aa6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 AP5S1Q9NUS5 200 aa6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 VAX2Q9UIW0 290 aa6.93□□□□□ -1.3
LIMCH1-221ENST00000515785 IGKV2-24A0A0C4DH68 120 aa6.92□□□□□ -1.3
LIMCH1-221ENST00000515785 UBE2D3P61077 147 aa6.92□□□□□ -1.3
LIMCH1-221ENST00000515785 UBE2D2P62837 147 aa6.92□□□□□ -1.3
LIMCH1-221ENST00000515785 RPL36AP83881 106 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-221ENST00000515785 MEF2BQ02080 365 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-221ENST00000515785 LINC00269Q8N2A0 174 aa6.92□□□□□ -1.3
LIMCH1-221ENST00000515785 RPL36ALQ969Q0 106 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-221ENST00000515785 TRBV6-8A0A0A6YYG3 113 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 H7C1H1 209 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 COX6A2Q02221 97 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 KRTAP5-3Q6L8H2 238 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 PQLC2Q6ZP29 291 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 DERL1Q9BUN8 251 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 SMDT1Q9H4I9 107 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 MANBALQ9NQG1 85 aa6.91□□□□□ -1.3
LIMCH1-221ENST00000515785 TRBV7-3A0A075B6L6 115 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 IGKV3D-20A0A0C4DH25 116 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 IFNA1P01562 189 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 CEBPGP53567 150 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 GAGE6Q13070 117 aa6.9□□□□□ -1.3
LIMCH1-221ENST00000515785 SRSF9Q13242 221 aaKnown RBP eCLIP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms