RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CSDC2Q9Y534 153 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-217ENST00000512946 CCL24O00175 119 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 IGLV2-8P01709 118 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 LOC107984640A0A0U1RRK4 108 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 COL4A5P29400 1685 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 TRBV6-5A0A0K0K1A5 114 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 AJUBAQ96IF1 538 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 PLXNB2O15031 1838 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 KRTAP27-1Q3LI81 207 aa8.55□□□□□ -1.04
LIMCH1-217ENST00000512946 ZDBF2Q9HCK1 2354 aa8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 RPS28P62857 69 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 EBI3Q14213 229 aa8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 C2orf91Q6ZV80 131 aa8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 TNS1Q9HBL0 1735 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 SPTAN1Q13813 2472 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 DIAPH2-AS1Q14236 149 aa8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 DOCK8Q8NF50 2099 aa8.54□□□□□ -1.04
LIMCH1-217ENST00000512946 C11orf53Q8IXP5 236 aa8.53□□□□□ -1.04
LIMCH1-217ENST00000512946 EML6Q6ZMW3 1958 aa8.53□□□□□ -1.04
LIMCH1-217ENST00000512946 IGLV4-3A0A075B6K6 122 aa8.53□□□□□ -1.04
LIMCH1-217ENST00000512946 DOCK6Q96HP0 2047 aa8.53□□□□□ -1.04
LIMCH1-217ENST00000512946 CDKN2A-AS1Q9UH64 79 aa8.53□□□□□ -1.04
LIMCH1-217ENST00000512946 NRXN2Q9P2S2 1712 aa8.53□□□□□ -1.04
LIMCH1-217ENST00000512946 PRAC2D3DTV9 90 aa8.52□□□□□ -1.04
LIMCH1-217ENST00000512946 PRYO14603 147 aa8.52□□□□□ -1.04
LIMCH1-217ENST00000512946 BCE1O60756 84 aa8.52□□□□□ -1.04
LIMCH1-217ENST00000512946 IGHV4-59P01825 116 aa8.52□□□□□ -1.04
LIMCH1-217ENST00000512946 CASP8AP2Q9UKL3 1982 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 CXCL6P80162 114 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 SCXQ7RTU7 201 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 MAPKAPK5-AS1Q8N8E1 139 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 SCN10AQ9Y5Y9 1956 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 EPOPA6NHQ4 379 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 WFDC10BQ8IUB3 73 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 NOTCH3Q9UM47 2321 aa8.52□□□□□ -1.05
LIMCH1-217ENST00000512946 FRMD6-AS1P0C7T7 363 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 C6orf99Q4VX62 202 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 RNF185Q96GF1 192 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 ZFAND3Q9H8U3 227 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 KLK12Q9UKR0 248 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 LIMD2Q9BT23 127 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 A0A0G2JMZ2 1700 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 LRRC37A2A6NM11 1700 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 LRRC37AA6NMS7 1700 aa8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 ZNF706Q9Y5V0 76 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-217ENST00000512946 P0C879 139 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 GDF5OSQ5U4N7 250 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 C9orf85Q96MD7 179 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 CCDC140Q96MF4 163 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 RBBP6Q7Z6E9 1792 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 RNF223E7ERA6 249 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 COX17Q14061 63 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 Q8N976 141 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 ABCA4P78363 2273 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 ZNF407Q9C0G0 2248 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 LY6HO94772 140 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 PROK2Q9HC23 129 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 DOCK5Q9H7D0 1870 aa8.5□□□□□ -1.05
LIMCH1-217ENST00000512946 Q8N9W7 124 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 PTPRDP23468 1912 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 INSL3P51460 131 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 HIGD2AQ9BW72 106 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 COL11A2P13942 1736 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 CENPFP49454 3210 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 M0R378 163 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 IGLV2-23P01705 113 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 MYCNOSP40205 109 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 TP53TG3Q9ULZ0 132 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 CELA1Q9UNI1 258 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 PARP14Q460N5 1801 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 SPTBN2O15020 2390 aa8.49□□□□□ -1.05
LIMCH1-217ENST00000512946 TRBV10-3A0A0K0K1G6 114 aa8.48□□□□□ -1.05
LIMCH1-217ENST00000512946 CTSZQ9UBR2 303 aa8.48□□□□□ -1.05
LIMCH1-217ENST00000512946 SPRY2O43597 315 aa8.48□□□□□ -1.05
LIMCH1-217ENST00000512946 REG3AQ06141 175 aa8.48□□□□□ -1.05
LIMCH1-217ENST00000512946 TRBV7-7A0A0K0K1E9 115 aa8.48□□□□□ -1.05
LIMCH1-217ENST00000512946 Q6ZQY7 126 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 NTM-AS1Q6ZSK4 140 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 C1orf158Q8N1D5 194 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 ARID2Q68CP9 1835 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 YLPM1P49750 1951 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 MYOFQ9NZM1 2061 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 C5orf56Q8N8D9 126 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 SLPIP03973 132 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 APRG1Q8IVJ8 170 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 KMT2EQ8IZD2 1858 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 IGLV1-47P01700 117 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 UBE2D3P61077 147 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 PRSS33Q8NF86 280 aa8.47□□□□□ -1.05
LIMCH1-217ENST00000512946 PHF3Q92576 2039 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-217ENST00000512946 ZNF503-AS2A6NEH8 195 aa8.46□□□□□ -1.05
LIMCH1-217ENST00000512946 SERTAD4-AS1Q5TG53 156 aa8.46□□□□□ -1.05
LIMCH1-217ENST00000512946 hDV103S1A0JD37 113 aa8.46□□□□□ -1.05
LIMCH1-217ENST00000512946 ESRGQ1W209 222 aa8.46□□□□□ -1.05
LIMCH1-217ENST00000512946 CHCHD10Q8WYQ3 142 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-217ENST00000512946 FAM19A1Q7Z5A9 133 aa8.46□□□□□ -1.06
LIMCH1-217ENST00000512946 ESM1Q9NQ30 184 aa8.45□□□□□ -1.06
LIMCH1-217ENST00000512946 CACNA1GO43497 2377 aa8.45□□□□□ -1.06
LIMCH1-217ENST00000512946 ROS1P08922 2347 aa8.45□□□□□ -1.06
LIMCH1-217ENST00000512946 IGKV1D-37A0A075B6S9 117 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms